Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TPM1P09493 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.56■□□□□ 0.88
TPM1P09493 PRKY-204ENST00000533551 1019 ntBASIC20.56■□□□□ 0.88
TPM1P09493 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.56■□□□□ 0.88
TPM1P09493 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.56■□□□□ 0.88
TPM1P09493 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.56■□□□□ 0.88
TPM1P09493 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.56■□□□□ 0.88
TPM1P09493 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TPM1P09493 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.56■□□□□ 0.88
TPM1P09493 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TPM1P09493 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.56■□□□□ 0.88
TPM1P09493 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TPM1P09493 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TPM1P09493 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
TPM1P09493 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TPM1P09493 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TPM1P09493 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TPM1P09493 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 HEIH-201ENST00000623091 1652 ntBASIC20.55■□□□□ 0.88
TPM1P09493 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.55■□□□□ 0.88
TPM1P09493 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.55■□□□□ 0.88
TPM1P09493 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.55■□□□□ 0.88
TPM1P09493 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 AC092437.1-201ENST00000624794 1048 ntBASIC20.55■□□□□ 0.88
TPM1P09493 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
TPM1P09493 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.55■□□□□ 0.88
TPM1P09493 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TPM1P09493 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.55■□□□□ 0.88
TPM1P09493 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM1P09493 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM1P09493 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM1P09493 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.54■□□□□ 0.88
TPM1P09493 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM1P09493 MYC-208ENST00000641036 567 ntBASIC20.54■□□□□ 0.88
TPM1P09493 MYC-209ENST00000641252 345 ntBASIC20.54■□□□□ 0.88
TPM1P09493 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TPM1P09493 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM1P09493 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TPM1P09493 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TPM1P09493 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.54■□□□□ 0.88
TPM1P09493 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.54■□□□□ 0.88
TPM1P09493 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TPM1P09493 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TPM1P09493 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
TPM1P09493 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TPM1P09493 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
TPM1P09493 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.53■□□□□ 0.88
TPM1P09493 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
TPM1P09493 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.53■□□□□ 0.88
TPM1P09493 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.53■□□□□ 0.88
TPM1P09493 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.53■□□□□ 0.88
TPM1P09493 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.53■□□□□ 0.88
TPM1P09493 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TPM1P09493 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms