Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.64■□□□□ 0.89
MMP3P08254 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.64■□□□□ 0.89
MMP3P08254 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.64■□□□□ 0.89
MMP3P08254 AL592071.1-201ENST00000611956 408 ntBASIC20.64■□□□□ 0.89
MMP3P08254 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.64■□□□□ 0.89
MMP3P08254 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
MMP3P08254 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP3P08254 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.64■□□□□ 0.89
MMP3P08254 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.64■□□□□ 0.89
MMP3P08254 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP3P08254 AC007952.6-201ENST00000573168 2673 ntBASIC20.64■□□□□ 0.89
MMP3P08254 AC003957.1-201ENST00000625108 2673 ntBASIC20.64■□□□□ 0.89
MMP3P08254 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MMP3P08254 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.64■□□□□ 0.89
MMP3P08254 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP3P08254 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP3P08254 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MMP3P08254 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MMP3P08254 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.63■□□□□ 0.89
MMP3P08254 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 KRT8P10-201ENST00000450021 1447 ntBASIC20.63■□□□□ 0.89
MMP3P08254 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.63■□□□□ 0.89
MMP3P08254 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.63■□□□□ 0.89
MMP3P08254 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.63■□□□□ 0.89
MMP3P08254 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.63■□□□□ 0.89
MMP3P08254 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
MMP3P08254 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MMP3P08254 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.63■□□□□ 0.89
MMP3P08254 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 LINC00167-201ENST00000530583 1419 ntBASIC20.62■□□□□ 0.89
MMP3P08254 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.62■□□□□ 0.89
MMP3P08254 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
MMP3P08254 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
MMP3P08254 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
MMP3P08254 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.62■□□□□ 0.89
MMP3P08254 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
MMP3P08254 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.62■□□□□ 0.89
MMP3P08254 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MMP3P08254 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.62■□□□□ 0.89
MMP3P08254 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.62■□□□□ 0.89
MMP3P08254 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.62■□□□□ 0.89
MMP3P08254 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.62■□□□□ 0.89
MMP3P08254 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
MMP3P08254 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MMP3P08254 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 KRT89P-201ENST00000620027 1478 ntBASIC20.62■□□□□ 0.89
MMP3P08254 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.62■□□□□ 0.89
MMP3P08254 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MMP3P08254 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
MMP3P08254 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.61■□□□□ 0.89
MMP3P08254 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.61■□□□□ 0.89
MMP3P08254 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.61■□□□□ 0.89
MMP3P08254 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
MMP3P08254 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.61■□□□□ 0.89
MMP3P08254 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
MMP3P08254 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.61■□□□□ 0.89
MMP3P08254 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.61■□□□□ 0.89
MMP3P08254 KRT18P41-201ENST00000518924 1277 ntBASIC20.61■□□□□ 0.89
MMP3P08254 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.61■□□□□ 0.89
MMP3P08254 AC138894.3-201ENST00000603787 634 ntBASIC20.61■□□□□ 0.89
MMP3P08254 AL031008.1-201ENST00000619963 541 ntBASIC20.61■□□□□ 0.89
MMP3P08254 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MMP3P08254 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MMP3P08254 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.6■□□□□ 0.89
MMP3P08254 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 RN7SL606P-201ENST00000472779 293 ntBASIC20.6■□□□□ 0.89
MMP3P08254 GUSBP12-201ENST00000513727 720 ntBASIC20.6■□□□□ 0.89
MMP3P08254 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MMP3P08254 Z69720.1-201ENST00000601483 472 ntBASIC20.6■□□□□ 0.89
MMP3P08254 AC124864.1-201ENST00000623408 392 ntBASIC20.6■□□□□ 0.89
MMP3P08254 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.6■□□□□ 0.89
MMP3P08254 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.6■□□□□ 0.89
MMP3P08254 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms