Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA1P02708 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.28■□□□□ 0.84
CHRNA1P02708 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA1P02708 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA1P02708 HEIH-201ENST00000623091 1652 ntBASIC20.28■□□□□ 0.84
CHRNA1P02708 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHRNA1P02708 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.28■□□□□ 0.84
CHRNA1P02708 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
CHRNA1P02708 AC093484.2-201ENST00000580996 2166 ntBASIC20.28■□□□□ 0.84
CHRNA1P02708 AC073130.3-201ENST00000624389 2278 ntBASIC20.28■□□□□ 0.84
CHRNA1P02708 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 KRT8P50-201ENST00000562022 1438 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CHRNA1P02708 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
CHRNA1P02708 AC007952.6-201ENST00000573168 2673 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 AC003957.1-201ENST00000625108 2673 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CHRNA1P02708 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.27■□□□□ 0.84
CHRNA1P02708 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA1P02708 AC009078.2-202ENST00000463353 338 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 RN7SL606P-201ENST00000472779 293 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 AC104819.1-201ENST00000504587 486 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.27■□□□□ 0.84
CHRNA1P02708 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.27■□□□□ 0.84
CHRNA1P02708 AC074051.2-201ENST00000565115 352 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 AL031008.1-201ENST00000619963 541 ntBASIC20.27■□□□□ 0.84
CHRNA1P02708 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHRNA1P02708 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.27■□□□□ 0.84
CHRNA1P02708 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA1P02708 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA1P02708 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA1P02708 LINC00167-201ENST00000530583 1419 ntBASIC20.27■□□□□ 0.83
CHRNA1P02708 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHRNA1P02708 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CHRNA1P02708 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHRNA1P02708 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CHRNA1P02708 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.26■□□□□ 0.83
CHRNA1P02708 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA1P02708 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA1P02708 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CHRNA1P02708 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 AC079781.3-201ENST00000449110 356 ntBASIC20.26■□□□□ 0.83
CHRNA1P02708 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA1P02708 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA1P02708 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.26■□□□□ 0.83
CHRNA1P02708 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.26■□□□□ 0.83
CHRNA1P02708 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHRNA1P02708 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 MTMR9LP-203ENST00000426597 1545 ntBASIC20.26■□□□□ 0.83
CHRNA1P02708 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.26■□□□□ 0.83
CHRNA1P02708 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHRNA1P02708 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA1P02708 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA1P02708 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CHRNA1P02708 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA1P02708 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.25■□□□□ 0.83
CHRNA1P02708 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.25■□□□□ 0.83
CHRNA1P02708 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 AL592071.1-201ENST00000611956 408 ntBASIC20.25■□□□□ 0.83
CHRNA1P02708 AC124864.1-201ENST00000623408 392 ntBASIC20.25■□□□□ 0.83
CHRNA1P02708 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHRNA1P02708 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.25■□□□□ 0.83
CHRNA1P02708 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
CHRNA1P02708 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHRNA1P02708 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHRNA1P02708 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms