Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 FSCN1P1-201ENST00000568912 1481 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 AC246785.2-201ENST00000432512 513 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 AP000347.1-202ENST00000435868 847 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.1■□□□□ 0.65
TOP3BO95985 AC092647.4-201ENST00000457211 535 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 AC011506.1-201ENST00000474329 610 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
TOP3BO95985 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.1■□□□□ 0.65
TOP3BO95985 AL138966.2-201ENST00000621997 464 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.1■□□□□ 0.65
TOP3BO95985 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 AL512353.2-201ENST00000448759 1962 ntBASIC19.1■□□□□ 0.65
TOP3BO95985 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TOP3BO95985 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TOP3BO95985 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.1■□□□□ 0.65
TOP3BO95985 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.09■□□□□ 0.65
TOP3BO95985 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.09■□□□□ 0.65
TOP3BO95985 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 AC097488.1-201ENST00000507834 756 ntBASIC19.09■□□□□ 0.65
TOP3BO95985 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.09■□□□□ 0.65
TOP3BO95985 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.09■□□□□ 0.65
TOP3BO95985 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.09■□□□□ 0.65
TOP3BO95985 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
TOP3BO95985 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.09■□□□□ 0.65
TOP3BO95985 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TOP3BO95985 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.09■□□□□ 0.65
TOP3BO95985 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TOP3BO95985 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TOP3BO95985 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TOP3BO95985 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
TOP3BO95985 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.08■□□□□ 0.65
TOP3BO95985 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TOP3BO95985 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
TOP3BO95985 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TOP3BO95985 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
TOP3BO95985 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 FAM207BP-201ENST00000447172 505 ntBASIC19.08■□□□□ 0.64
TOP3BO95985 B3GAT3P1-201ENST00000471720 806 ntBASIC19.08■□□□□ 0.64
TOP3BO95985 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.08■□□□□ 0.64
TOP3BO95985 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.08■□□□□ 0.64
TOP3BO95985 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
TOP3BO95985 AP006587.1-201ENST00000534129 1502 ntBASIC19.08■□□□□ 0.64
TOP3BO95985 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.08■□□□□ 0.64
TOP3BO95985 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TOP3BO95985 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.07■□□□□ 0.64
TOP3BO95985 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.07■□□□□ 0.64
TOP3BO95985 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TOP3BO95985 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
TOP3BO95985 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TOP3BO95985 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms