Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC188H7C350 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC188H7C350 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
CCDC188H7C350 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
CCDC188H7C350 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC188H7C350 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC188H7C350 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC188H7C350 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC188H7C350 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC188H7C350 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC188H7C350 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC188H7C350 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.41■□□□□ 0.7
CCDC188H7C350 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC188H7C350 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 POM121L13P-201ENST00000422362 380 ntBASIC19.41■□□□□ 0.7
CCDC188H7C350 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC188H7C350 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC188H7C350 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC188H7C350 Z85996.1-201ENST00000494644 937 ntBASIC19.41■□□□□ 0.7
CCDC188H7C350 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.41■□□□□ 0.7
CCDC188H7C350 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC188H7C350 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
CCDC188H7C350 KRT8P11-201ENST00000409686 1436 ntBASIC19.41■□□□□ 0.7
CCDC188H7C350 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC188H7C350 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC188H7C350 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC188H7C350 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC188H7C350 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC188H7C350 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CCDC188H7C350 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC188H7C350 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC188H7C350 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC188H7C350 UNC93B4-201ENST00000505679 747 ntBASIC19.4■□□□□ 0.7
CCDC188H7C350 PRSS44-201ENST00000515154 1146 ntBASIC19.4■□□□□ 0.7
CCDC188H7C350 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC188H7C350 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC188H7C350 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC188H7C350 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
CCDC188H7C350 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC188H7C350 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC188H7C350 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC188H7C350 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC188H7C350 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC188H7C350 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CCDC188H7C350 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
CCDC188H7C350 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.39■□□□□ 0.7
CCDC188H7C350 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC188H7C350 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC188H7C350 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC188H7C350 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC188H7C350 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC188H7C350 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC188H7C350 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC188H7C350 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.39■□□□□ 0.69
CCDC188H7C350 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CCDC188H7C350 AL137784.2-201ENST00000607332 1000 ntBASIC19.39■□□□□ 0.69
CCDC188H7C350 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC188H7C350 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC188H7C350 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC188H7C350 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
CCDC188H7C350 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC188H7C350 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC188H7C350 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CCDC188H7C350 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms