Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VCX3AQ9NNX9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 HLA-G-202ENST00000376815 851 ntBASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 HLA-G-203ENST00000376818 1127 ntBASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.46■□□□□ 0.39
VCX3AQ9NNX9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VCX3AQ9NNX9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VCX3AQ9NNX9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
VCX3AQ9NNX9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VCX3AQ9NNX9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 AC010141.2-201ENST00000452426 721 ntBASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCX3AQ9NNX9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 AC079140.4-201ENST00000507448 529 ntBASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCX3AQ9NNX9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms