Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 NME4-212ENST00000621774 904 ntTSL 3 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC22.69■■□□□ 1.22
RTFDC1Q9BY42 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 AC120114.3-201ENST00000611923 658 ntBASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 TP73-AS1-207ENST00000624167 988 ntBASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTFDC1Q9BY42 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 AL590627.1-203ENST00000421194 1026 ntBASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTFDC1Q9BY42 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 AL353692.3-201ENST00000407031 1396 ntBASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 AP000593.1-201ENST00000393668 712 ntBASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 VENTXP7-201ENST00000475503 772 ntBASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
RTFDC1Q9BY42 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 ABR-217ENST00000572441 563 ntTSL 4 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 AC064862.7-201ENST00000604520 867 ntBASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTFDC1Q9BY42 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms