Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 NOC2LP2-201ENST00000407594 1944 ntBASIC16.31■□□□□ 0.2
NKX3-1Q99801 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
NKX3-1Q99801 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NKX3-1Q99801 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 ESRRAP1-201ENST00000400596 1257 ntBASIC16.29■□□□□ 0.2
NKX3-1Q99801 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.29■□□□□ 0.2
NKX3-1Q99801 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NKX3-1Q99801 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
NKX3-1Q99801 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NKX3-1Q99801 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms