Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 AL138831.2-201ENST00000606564 490 ntBASIC30.9■■■□□ 2.54
IFT140Q96RY7 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 KRT18P28-201ENST00000453838 1332 ntBASIC30.9■■■□□ 2.54
IFT140Q96RY7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
IFT140Q96RY7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
IFT140Q96RY7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 UNC93B6-202ENST00000528242 690 ntBASIC30.89■■■□□ 2.54
IFT140Q96RY7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 AL139288.1-201ENST00000623748 933 ntBASIC30.89■■■□□ 2.54
IFT140Q96RY7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
IFT140Q96RY7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
IFT140Q96RY7 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
IFT140Q96RY7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC30.89■■■□□ 2.54
IFT140Q96RY7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC30.89■■■□□ 2.53
IFT140Q96RY7 CRCP-205ENST00000431089 942 ntTSL 2 BASIC30.89■■■□□ 2.53
IFT140Q96RY7 AC007967.2-201ENST00000432613 625 ntBASIC30.89■■■□□ 2.53
IFT140Q96RY7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
IFT140Q96RY7 DANCR-204ENST00000444958 709 ntTSL 3 BASIC30.89■■■□□ 2.53
IFT140Q96RY7 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC30.89■■■□□ 2.53
IFT140Q96RY7 AC011467.2-201ENST00000598425 242 ntBASIC30.89■■■□□ 2.53
IFT140Q96RY7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC30.88■■■□□ 2.53
IFT140Q96RY7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC30.88■■■□□ 2.53
IFT140Q96RY7 TEX21P-204ENST00000641479 1693 ntBASIC30.88■■■□□ 2.53
IFT140Q96RY7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC30.88■■■□□ 2.53
IFT140Q96RY7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 AC211486.1-202ENST00000416371 468 ntBASIC30.88■■■□□ 2.53
IFT140Q96RY7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 AC211476.1-201ENST00000503899 468 ntBASIC30.88■■■□□ 2.53
IFT140Q96RY7 AC113404.2-201ENST00000507884 177 ntBASIC30.88■■■□□ 2.53
IFT140Q96RY7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
IFT140Q96RY7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
IFT140Q96RY7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC30.87■■■□□ 2.53
IFT140Q96RY7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
IFT140Q96RY7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC30.87■■■□□ 2.53
IFT140Q96RY7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC30.87■■■□□ 2.53
IFT140Q96RY7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC30.87■■■□□ 2.53
IFT140Q96RY7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
IFT140Q96RY7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
IFT140Q96RY7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC30.87■■■□□ 2.53
IFT140Q96RY7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
IFT140Q96RY7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
IFT140Q96RY7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
IFT140Q96RY7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 YBX1P5-201ENST00000509441 847 ntBASIC30.86■■■□□ 2.53
IFT140Q96RY7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
IFT140Q96RY7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC30.86■■■□□ 2.53
IFT140Q96RY7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 AC009533.2-201ENST00000543664 586 ntBASIC30.85■■■□□ 2.53
IFT140Q96RY7 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC30.85■■■□□ 2.53
IFT140Q96RY7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
IFT140Q96RY7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC30.84■■■□□ 2.53
IFT140Q96RY7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
IFT140Q96RY7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
IFT140Q96RY7 CALY-203ENST00000368558 825 ntTSL 5 BASIC30.84■■■□□ 2.53
IFT140Q96RY7 HTR5BP-201ENST00000430851 1154 ntBASIC30.84■■■□□ 2.53
IFT140Q96RY7 ABCD1P5-201ENST00000445663 754 ntBASIC30.84■■■□□ 2.53
IFT140Q96RY7 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC30.84■■■□□ 2.53
IFT140Q96RY7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
IFT140Q96RY7 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms