Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 FGFR3P6-201ENST00000457012 610 ntBASIC18.45■□□□□ 0.54
VPS13AQ96RL7 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.45■□□□□ 0.54
VPS13AQ96RL7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 RPS2P28-201ENST00000314255 741 ntBASIC18.44■□□□□ 0.54
VPS13AQ96RL7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 CNN2P11-201ENST00000429351 262 ntBASIC18.44■□□□□ 0.54
VPS13AQ96RL7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 HOXB1-202ENST00000577092 1414 ntBASIC18.44■□□□□ 0.54
VPS13AQ96RL7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.44■□□□□ 0.54
VPS13AQ96RL7 NUS1P2-201ENST00000417358 873 ntBASIC18.44■□□□□ 0.54
VPS13AQ96RL7 AL591684.3-201ENST00000605187 298 ntBASIC18.44■□□□□ 0.54
VPS13AQ96RL7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13AQ96RL7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.43■□□□□ 0.54
VPS13AQ96RL7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 IGHV3-41-201ENST00000613121 348 ntBASIC18.43■□□□□ 0.54
VPS13AQ96RL7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS13AQ96RL7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13AQ96RL7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 AC002347.1-201ENST00000569543 541 ntBASIC18.41■□□□□ 0.54
VPS13AQ96RL7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS13AQ96RL7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms