Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 FAAHP1-202ENST00000446499 1238 ntBASIC19.01■□□□□ 0.63
CHFRQ96EP1 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHFRQ96EP1 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CHFRQ96EP1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19■□□□□ 0.63
CHFRQ96EP1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHFRQ96EP1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHFRQ96EP1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19■□□□□ 0.63
CHFRQ96EP1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19■□□□□ 0.63
CHFRQ96EP1 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19■□□□□ 0.63
CHFRQ96EP1 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19■□□□□ 0.63
CHFRQ96EP1 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19■□□□□ 0.63
CHFRQ96EP1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19■□□□□ 0.63
CHFRQ96EP1 AC079781.3-201ENST00000449110 356 ntBASIC19■□□□□ 0.63
CHFRQ96EP1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19■□□□□ 0.63
CHFRQ96EP1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19■□□□□ 0.63
CHFRQ96EP1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 AL158211.5-201ENST00000623583 2518 ntBASIC19■□□□□ 0.63
CHFRQ96EP1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHFRQ96EP1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 FOSL1P1-201ENST00000511041 816 ntBASIC18.99■□□□□ 0.63
CHFRQ96EP1 AC012615.1-201ENST00000565797 1299 ntBASIC18.99■□□□□ 0.63
CHFRQ96EP1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.99■□□□□ 0.63
CHFRQ96EP1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHFRQ96EP1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 AP003733.1-201ENST00000491725 852 ntBASIC18.98■□□□□ 0.63
CHFRQ96EP1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 AC068587.9-201ENST00000641814 219 ntBASIC18.98■□□□□ 0.63
CHFRQ96EP1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.98■□□□□ 0.63
CHFRQ96EP1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHFRQ96EP1 AC141586.3-201ENST00000562166 1838 ntBASIC18.97■□□□□ 0.63
CHFRQ96EP1 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CHFRQ96EP1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHFRQ96EP1 AC034236.2-201ENST00000606662 1610 ntBASIC18.97■□□□□ 0.63
CHFRQ96EP1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms