Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 PTGES2-AS1-201ENST00000443493 2100 ntBASIC24.36■■□□□ 1.49
RTF1Q92541 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
RTF1Q92541 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC24.36■■□□□ 1.49
RTF1Q92541 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RTF1Q92541 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC24.36■■□□□ 1.49
RTF1Q92541 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC24.35■■□□□ 1.49
RTF1Q92541 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC24.35■■□□□ 1.49
RTF1Q92541 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC24.35■■□□□ 1.49
RTF1Q92541 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.35■■□□□ 1.49
RTF1Q92541 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC24.35■■□□□ 1.49
RTF1Q92541 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC24.35■■□□□ 1.49
RTF1Q92541 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC24.35■■□□□ 1.49
RTF1Q92541 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RTF1Q92541 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 Z98044.1-201ENST00000632503 1764 ntBASIC24.34■■□□□ 1.49
RTF1Q92541 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
RTF1Q92541 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
RTF1Q92541 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
RTF1Q92541 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC24.34■■□□□ 1.49
RTF1Q92541 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC24.34■■□□□ 1.49
RTF1Q92541 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.34■■□□□ 1.49
RTF1Q92541 AL136038.4-201ENST00000603606 1261 ntBASIC24.34■■□□□ 1.49
RTF1Q92541 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC24.34■■□□□ 1.49
RTF1Q92541 AC093458.2-201ENST00000623150 629 ntBASIC24.34■■□□□ 1.49
RTF1Q92541 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC24.34■■□□□ 1.49
RTF1Q92541 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
RTF1Q92541 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC24.34■■□□□ 1.49
RTF1Q92541 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RTF1Q92541 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
RTF1Q92541 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
RTF1Q92541 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC24.33■■□□□ 1.49
RTF1Q92541 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC24.33■■□□□ 1.49
RTF1Q92541 NAT14-202ENST00000587400 416 ntTSL 5 BASIC24.33■■□□□ 1.49
RTF1Q92541 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.33■■□□□ 1.49
RTF1Q92541 AL391807.1-203ENST00000604392 2365 ntBASIC24.33■■□□□ 1.49
RTF1Q92541 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RTF1Q92541 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
RTF1Q92541 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
RTF1Q92541 NFYC-AS1-201ENST00000606277 1687 ntBASIC24.33■■□□□ 1.49
RTF1Q92541 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC24.33■■□□□ 1.48
RTF1Q92541 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
RTF1Q92541 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 MTMR9LP-203ENST00000426597 1545 ntBASIC24.32■■□□□ 1.48
RTF1Q92541 CYP51A1P1-201ENST00000492267 1507 ntBASIC24.32■■□□□ 1.48
RTF1Q92541 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC24.32■■□□□ 1.48
RTF1Q92541 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC24.32■■□□□ 1.48
RTF1Q92541 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC24.32■■□□□ 1.48
RTF1Q92541 HLA-F-220ENST00000434407 884 ntBASIC24.32■■□□□ 1.48
RTF1Q92541 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC24.32■■□□□ 1.48
RTF1Q92541 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC24.32■■□□□ 1.48
RTF1Q92541 METTL23-204ENST00000586752 904 ntTSL 2 BASIC24.32■■□□□ 1.48
RTF1Q92541 AC069148.1-201ENST00000608741 768 ntBASIC24.32■■□□□ 1.48
RTF1Q92541 AC083906.6-201ENST00000641366 219 ntBASIC24.32■■□□□ 1.48
RTF1Q92541 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RTF1Q92541 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTF1Q92541 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RTF1Q92541 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms