Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AP002414.4-201ENST00000589764 1148 ntBASIC18.2■□□□□ 0.5
LMX1AQ8TE12 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LMX1AQ8TE12 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 TPM4P1-201ENST00000436100 807 ntBASIC18.19■□□□□ 0.5
LMX1AQ8TE12 AP002383.4-201ENST00000442518 975 ntBASIC18.19■□□□□ 0.5
LMX1AQ8TE12 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 AFG3L1P-217ENST00000557444 2447 ntBASIC18.19■□□□□ 0.5
LMX1AQ8TE12 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.19■□□□□ 0.5
LMX1AQ8TE12 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 CHCHD2P8-201ENST00000429873 447 ntBASIC18.18■□□□□ 0.5
LMX1AQ8TE12 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 RNF126P1-202ENST00000569893 925 ntBASIC18.18■□□□□ 0.5
LMX1AQ8TE12 MIR3180-1-201ENST00000580374 94 ntBASIC18.18■□□□□ 0.5
LMX1AQ8TE12 MIR3180-3-201ENST00000584616 94 ntBASIC18.18■□□□□ 0.5
LMX1AQ8TE12 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 KRT18P1-202ENST00000452408 1331 ntBASIC18.18■□□□□ 0.5
LMX1AQ8TE12 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LMX1AQ8TE12 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 AL032819.2-201ENST00000624543 2162 ntBASIC18.17■□□□□ 0.5
LMX1AQ8TE12 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LMX1AQ8TE12 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.16■□□□□ 0.5
LMX1AQ8TE12 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms