Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 AC023274.1-201ENST00000418278 595 ntBASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMC1BQ8NDV3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 AC007225.1-201ENST00000566331 1836 ntBASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 RCN1P2-201ENST00000398357 915 ntBASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 PAM16-208ENST00000573553 722 ntTSL 2 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SMC1BQ8NDV3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 CCS-201ENST00000310190 942 ntTSL 5 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 AC007967.2-201ENST00000432613 625 ntBASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 KRT8P3-201ENST00000519669 1449 ntBASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 OR7E14P-202ENST00000530490 1290 ntBASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 SPCS2P1-201ENST00000561636 679 ntBASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SMC1BQ8NDV3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 AC254562.1-201ENST00000417586 456 ntBASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 AC012640.2-201ENST00000561606 901 ntBASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.09■■□□□ 1.13
SMC1BQ8NDV3 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms