Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 MIR6724-1-201ENST00000616420 92 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 MIR6724-2-201ENST00000616483 92 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 MIR6724-4-201ENST00000617390 92 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 MIR6724-3-201ENST00000622482 92 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 RARRES2P11-201ENST00000635158 484 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 AC105020.1-201ENST00000435356 2205 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CLRN3Q8NCR9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLRN3Q8NCR9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 CD72-202ENST00000378430 585 ntTSL 3 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 UNC93B8-201ENST00000511903 705 ntBASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 AL023806.1-201ENST00000603994 1649 ntBASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms