Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 MESTP1-201ENST00000404287 994 ntBASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC40Q4G0X9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC40Q4G0X9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 RPS2P55-201ENST00000397318 883 ntBASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 AC107956.1-201ENST00000494359 873 ntBASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 AC126763.1-201ENST00000552015 2118 ntBASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 AP000692.2-201ENST00000608391 879 ntBASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC40Q4G0X9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 RCC2P3-201ENST00000418112 1537 ntBASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC40Q4G0X9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms