Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.48□□□□□ -0.25
PRKDCP78527 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 ELL2P1-201ENST00000413990 1906 ntBASIC13.48□□□□□ -0.25
PRKDCP78527 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.48□□□□□ -0.25
PRKDCP78527 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.48□□□□□ -0.25
PRKDCP78527 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.48□□□□□ -0.25
PRKDCP78527 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
PRKDCP78527 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.48□□□□□ -0.25
PRKDCP78527 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.48□□□□□ -0.25
PRKDCP78527 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
PRKDCP78527 THAP5-204ENST00000438865 868 ntTSL 2 BASIC13.48□□□□□ -0.25
PRKDCP78527 OR7E14P-202ENST00000530490 1290 ntBASIC13.48□□□□□ -0.25
PRKDCP78527 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.48□□□□□ -0.25
PRKDCP78527 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
PRKDCP78527 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.47□□□□□ -0.25
PRKDCP78527 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.47□□□□□ -0.25
PRKDCP78527 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.47□□□□□ -0.25
PRKDCP78527 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
PRKDCP78527 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.47□□□□□ -0.25
PRKDCP78527 AF228730.6-201ENST00000641497 218 ntBASIC13.47□□□□□ -0.25
PRKDCP78527 AC084121.3-201ENST00000641716 218 ntBASIC13.47□□□□□ -0.25
PRKDCP78527 AC105233.6-201ENST00000642093 218 ntBASIC13.47□□□□□ -0.25
PRKDCP78527 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC13.47□□□□□ -0.25
PRKDCP78527 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.47□□□□□ -0.25
PRKDCP78527 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC13.47□□□□□ -0.25
PRKDCP78527 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC13.47□□□□□ -0.25
PRKDCP78527 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.47□□□□□ -0.25
PRKDCP78527 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
PRKDCP78527 AL353692.3-201ENST00000407031 1396 ntBASIC13.47□□□□□ -0.25
PRKDCP78527 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
PRKDCP78527 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
PRKDCP78527 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.46□□□□□ -0.25
PRKDCP78527 AL606495.2-201ENST00000605867 535 ntBASIC13.46□□□□□ -0.25
PRKDCP78527 AJ011932.1-201ENST00000621707 465 ntBASIC13.46□□□□□ -0.25
PRKDCP78527 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
PRKDCP78527 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
PRKDCP78527 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 MIR4745-201ENST00000577608 62 ntBASIC13.46□□□□□ -0.25
PRKDCP78527 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 AC064836.3-201ENST00000607928 673 ntBASIC13.46□□□□□ -0.25
PRKDCP78527 AL008721.1-201ENST00000609964 604 ntBASIC13.46□□□□□ -0.25
PRKDCP78527 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
PRKDCP78527 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC13.46□□□□□ -0.25
PRKDCP78527 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
PRKDCP78527 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
PRKDCP78527 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC13.46□□□□□ -0.25
PRKDCP78527 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC13.46□□□□□ -0.25
PRKDCP78527 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.46□□□□□ -0.26
PRKDCP78527 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
PRKDCP78527 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC13.46□□□□□ -0.26
PRKDCP78527 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC13.46□□□□□ -0.26
PRKDCP78527 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
PRKDCP78527 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
PRKDCP78527 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
PRKDCP78527 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC13.46□□□□□ -0.26
PRKDCP78527 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
PRKDCP78527 RCN1P2-201ENST00000398357 915 ntBASIC13.45□□□□□ -0.26
PRKDCP78527 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.45□□□□□ -0.26
PRKDCP78527 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 AC008735.5-201ENST00000623544 497 ntBASIC13.45□□□□□ -0.26
PRKDCP78527 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
PRKDCP78527 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC13.45□□□□□ -0.26
PRKDCP78527 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.45□□□□□ -0.26
PRKDCP78527 PRSS29P-201ENST00000440800 595 ntBASIC13.45□□□□□ -0.26
PRKDCP78527 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms