Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.97■□□□□ 0.79
COL4A4P53420 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 AC091607.1-201ENST00000490318 1060 ntBASIC19.97■□□□□ 0.79
COL4A4P53420 POLD2P1-201ENST00000511220 997 ntBASIC19.97■□□□□ 0.79
COL4A4P53420 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.97■□□□□ 0.79
COL4A4P53420 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.97■□□□□ 0.79
COL4A4P53420 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
COL4A4P53420 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.96■□□□□ 0.79
COL4A4P53420 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.96■□□□□ 0.79
COL4A4P53420 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.96■□□□□ 0.79
COL4A4P53420 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.96■□□□□ 0.79
COL4A4P53420 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL4A4P53420 IGHV3-47-201ENST00000425060 335 ntBASIC19.96■□□□□ 0.79
COL4A4P53420 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 AC073648.2-201ENST00000510116 352 ntBASIC19.96■□□□□ 0.79
COL4A4P53420 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.96■□□□□ 0.79
COL4A4P53420 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.96■□□□□ 0.79
COL4A4P53420 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
COL4A4P53420 LINC01711-201ENST00000598340 967 ntBASIC19.96■□□□□ 0.79
COL4A4P53420 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.96■□□□□ 0.79
COL4A4P53420 AC112497.1-201ENST00000624824 639 ntBASIC19.96■□□□□ 0.79
COL4A4P53420 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.96■□□□□ 0.79
COL4A4P53420 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
COL4A4P53420 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL4A4P53420 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.95■□□□□ 0.78
COL4A4P53420 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.95■□□□□ 0.78
COL4A4P53420 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 AC005332.7-201ENST00000614046 2005 ntBASIC19.95■□□□□ 0.78
COL4A4P53420 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL4A4P53420 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
COL4A4P53420 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.95■□□□□ 0.78
COL4A4P53420 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.95■□□□□ 0.78
COL4A4P53420 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.95■□□□□ 0.78
COL4A4P53420 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.95■□□□□ 0.78
COL4A4P53420 AC010240.3-201ENST00000607688 395 ntBASIC19.95■□□□□ 0.78
COL4A4P53420 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
COL4A4P53420 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL4A4P53420 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
COL4A4P53420 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.94■□□□□ 0.78
COL4A4P53420 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
COL4A4P53420 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 KRT18P23-201ENST00000435622 1283 ntBASIC19.94■□□□□ 0.78
COL4A4P53420 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL4A4P53420 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.94■□□□□ 0.78
COL4A4P53420 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.94■□□□□ 0.78
COL4A4P53420 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 KRT18P67-201ENST00000432816 1264 ntBASIC19.94■□□□□ 0.78
COL4A4P53420 AC018712.1-201ENST00000455767 687 ntBASIC19.94■□□□□ 0.78
COL4A4P53420 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.94■□□□□ 0.78
COL4A4P53420 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.94■□□□□ 0.78
COL4A4P53420 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.94■□□□□ 0.78
COL4A4P53420 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL4A4P53420 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.93■□□□□ 0.78
COL4A4P53420 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL4A4P53420 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms