Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX1P48742 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.79■□□□□ 0.76
LHX1P48742 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.79■□□□□ 0.76
LHX1P48742 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.79■□□□□ 0.76
LHX1P48742 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.79■□□□□ 0.76
LHX1P48742 AC010240.3-201ENST00000607688 395 ntBASIC19.79■□□□□ 0.76
LHX1P48742 HYMAI.1-201ENST00000620949 238 ntBASIC19.79■□□□□ 0.76
LHX1P48742 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX1P48742 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX1P48742 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX1P48742 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX1P48742 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX1P48742 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.78■□□□□ 0.76
LHX1P48742 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LHX1P48742 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.78■□□□□ 0.76
LHX1P48742 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
LHX1P48742 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.78■□□□□ 0.76
LHX1P48742 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.78■□□□□ 0.76
LHX1P48742 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.78■□□□□ 0.76
LHX1P48742 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LHX1P48742 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LHX1P48742 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LHX1P48742 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 LINC01311-201ENST00000565162 1445 ntBASIC19.77■□□□□ 0.76
LHX1P48742 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LHX1P48742 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX1P48742 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.77■□□□□ 0.76
LHX1P48742 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 AP000593.1-201ENST00000393668 712 ntBASIC19.77■□□□□ 0.76
LHX1P48742 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
LHX1P48742 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.77■□□□□ 0.76
LHX1P48742 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.77■□□□□ 0.76
LHX1P48742 AL157888.1-201ENST00000631930 593 ntBASIC19.77■□□□□ 0.76
LHX1P48742 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LHX1P48742 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
LHX1P48742 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LHX1P48742 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.77■□□□□ 0.75
LHX1P48742 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LHX1P48742 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LHX1P48742 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX1P48742 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LHX1P48742 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX1P48742 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.76■□□□□ 0.75
LHX1P48742 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.76■□□□□ 0.75
LHX1P48742 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.76■□□□□ 0.75
LHX1P48742 ZNF444P1-201ENST00000559497 298 ntBASIC19.76■□□□□ 0.75
LHX1P48742 AC009065.1-201ENST00000564055 1225 ntBASIC19.76■□□□□ 0.75
LHX1P48742 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.76■□□□□ 0.75
LHX1P48742 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LHX1P48742 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.76■□□□□ 0.75
LHX1P48742 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.76■□□□□ 0.75
LHX1P48742 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LHX1P48742 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
LHX1P48742 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX1P48742 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX1P48742 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX1P48742 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX1P48742 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LHX1P48742 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX1P48742 HBZP1-201ENST00000354915 429 ntBASIC19.75■□□□□ 0.75
LHX1P48742 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX1P48742 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.75■□□□□ 0.75
LHX1P48742 FAM86EP-206ENST00000510506 987 ntBASIC19.75■□□□□ 0.75
LHX1P48742 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX1P48742 AL136038.3-201ENST00000561909 1096 ntBASIC19.75■□□□□ 0.75
LHX1P48742 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms