Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 AC005336.2-201ENST00000593183 939 ntBASIC21.31■■□□□ 1
TM4SF4P48230 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.31■■□□□ 1
TM4SF4P48230 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TM4SF4P48230 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TM4SF4P48230 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TM4SF4P48230 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.31■■□□□ 1
TM4SF4P48230 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TM4SF4P48230 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.31■■□□□ 1
TM4SF4P48230 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
TM4SF4P48230 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.3■■□□□ 1
TM4SF4P48230 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 LBH-203ENST00000404397 543 ntTSL 4 BASIC21.3■■□□□ 1
TM4SF4P48230 AC004832.2-201ENST00000426397 482 ntBASIC21.3■■□□□ 1
TM4SF4P48230 AC092910.1-201ENST00000482027 1129 ntBASIC21.3■■□□□ 1
TM4SF4P48230 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.3■■□□□ 1
TM4SF4P48230 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 AC012640.2-201ENST00000561606 901 ntBASIC21.3■■□□□ 1
TM4SF4P48230 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC21.3■■□□□ 1
TM4SF4P48230 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC21.3■■□□□ 1
TM4SF4P48230 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC21.3■■□□□ 1
TM4SF4P48230 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.3■■□□□ 1
TM4SF4P48230 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
TM4SF4P48230 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM4SF4P48230 AL391422.3-201ENST00000603791 2761 ntBASIC21.3■■□□□ 1
TM4SF4P48230 AP005117.1-201ENST00000584346 1413 ntBASIC21.29■■□□□ 1
TM4SF4P48230 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.29■■□□□ 1
TM4SF4P48230 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.29■■□□□ 1
TM4SF4P48230 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.29■■□□□ 1
TM4SF4P48230 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 COA5-202ENST00000409997 557 ntTSL 4 BASIC21.29■■□□□ 1
TM4SF4P48230 DNAJB3-202ENST00000449667 1266 ntBASIC21.29■■□□□ 1
TM4SF4P48230 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.29■■□□□ 1
TM4SF4P48230 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.29■■□□□ 1
TM4SF4P48230 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.29■■□□□ 1
TM4SF4P48230 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TM4SF4P48230 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.29■■□□□ 1
TM4SF4P48230 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.29■■□□□ 1
TM4SF4P48230 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
TM4SF4P48230 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.28■■□□□ 1
TM4SF4P48230 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.28■■□□□ 1
TM4SF4P48230 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.28■■□□□ 1
TM4SF4P48230 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.28■■□□□ 1
TM4SF4P48230 INTS4P1-201ENST00000438455 1935 ntBASIC21.28■■□□□ 1
TM4SF4P48230 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
TM4SF4P48230 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM4SF4P48230 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.28■■□□□ 1
TM4SF4P48230 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.28■■□□□ 1
TM4SF4P48230 SART3-203ENST00000546611 1184 ntBASIC21.28■■□□□ 1
TM4SF4P48230 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.28■■□□□ 1
TM4SF4P48230 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.28■■□□□ 1
TM4SF4P48230 AC112777.1-201ENST00000540175 1423 ntBASIC21.28■■□□□ 1
TM4SF4P48230 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM4SF4P48230 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.28■■□□□ 1
TM4SF4P48230 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.27■■□□□ 1
TM4SF4P48230 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.27■■□□□ 1
TM4SF4P48230 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.27■■□□□ 1
TM4SF4P48230 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.27■■□□□ 1
TM4SF4P48230 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TM4SF4P48230 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TM4SF4P48230 AC009533.2-201ENST00000543664 586 ntBASIC21.27■■□□□ 1
TM4SF4P48230 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.27■■□□□ 1
TM4SF4P48230 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.27■■□□□ 1
TM4SF4P48230 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
TM4SF4P48230 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
TM4SF4P48230 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.26■□□□□ 0.99
TM4SF4P48230 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TM4SF4P48230 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TM4SF4P48230 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.26■□□□□ 0.99
TM4SF4P48230 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.26■□□□□ 0.99
TM4SF4P48230 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.26■□□□□ 0.99
TM4SF4P48230 OR7E14P-202ENST00000530490 1290 ntBASIC21.26■□□□□ 0.99
TM4SF4P48230 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TM4SF4P48230 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.26■□□□□ 0.99
TM4SF4P48230 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TM4SF4P48230 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
TM4SF4P48230 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TM4SF4P48230 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TM4SF4P48230 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.26■□□□□ 0.99
TM4SF4P48230 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TM4SF4P48230 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TM4SF4P48230 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TM4SF4P48230 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
TM4SF4P48230 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms