Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SOX3P41225 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.58■□□□□ 0.4
SOX3P41225 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SOX3P41225 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
SOX3P41225 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.58■□□□□ 0.4
SOX3P41225 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SOX3P41225 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.57■□□□□ 0.4
SOX3P41225 AC113347.1-201ENST00000413321 391 ntBASIC17.57■□□□□ 0.4
SOX3P41225 SLC25A1P2-201ENST00000430693 912 ntBASIC17.57■□□□□ 0.4
SOX3P41225 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.57■□□□□ 0.4
SOX3P41225 TSPY21P-201ENST00000433481 731 ntBASIC17.57■□□□□ 0.4
SOX3P41225 CCR12P-201ENST00000446203 998 ntBASIC17.57■□□□□ 0.4
SOX3P41225 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
SOX3P41225 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.57■□□□□ 0.4
SOX3P41225 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
SOX3P41225 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX3P41225 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX3P41225 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SOX3P41225 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 AC005521.1-201ENST00000393351 872 ntBASIC17.56■□□□□ 0.4
SOX3P41225 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
SOX3P41225 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.56■□□□□ 0.4
SOX3P41225 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
SOX3P41225 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.56■□□□□ 0.4
SOX3P41225 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.56■□□□□ 0.4
SOX3P41225 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX3P41225 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX3P41225 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX3P41225 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
SOX3P41225 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 RN7SL850P-201ENST00000579959 291 ntBASIC17.55■□□□□ 0.4
SOX3P41225 FAM87A-204ENST00000613235 858 ntBASIC17.55■□□□□ 0.4
SOX3P41225 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SOX3P41225 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
SOX3P41225 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SOX3P41225 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SOX3P41225 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.55■□□□□ 0.4
SOX3P41225 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.55■□□□□ 0.4
SOX3P41225 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SOX3P41225 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.54■□□□□ 0.4
SOX3P41225 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SOX3P41225 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms