Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MTMR9LP-203ENST00000426597 1545 ntBASIC19.7■□□□□ 0.74
BDNFP23560 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
BDNFP23560 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
BDNFP23560 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.7■□□□□ 0.74
BDNFP23560 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.69■□□□□ 0.74
BDNFP23560 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
BDNFP23560 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
BDNFP23560 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.69■□□□□ 0.74
BDNFP23560 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.69■□□□□ 0.74
BDNFP23560 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.69■□□□□ 0.74
BDNFP23560 AL358472.4-201ENST00000633140 710 ntBASIC19.69■□□□□ 0.74
BDNFP23560 AC083906.6-201ENST00000641366 219 ntBASIC19.69■□□□□ 0.74
BDNFP23560 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.69■□□□□ 0.74
BDNFP23560 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.69■□□□□ 0.74
BDNFP23560 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
BDNFP23560 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 HOXB1-202ENST00000577092 1414 ntBASIC19.68■□□□□ 0.74
BDNFP23560 Z98044.1-201ENST00000632503 1764 ntBASIC19.68■□□□□ 0.74
BDNFP23560 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.68■□□□□ 0.74
BDNFP23560 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.68■□□□□ 0.74
BDNFP23560 AC083849.1-201ENST00000615227 514 ntBASIC19.68■□□□□ 0.74
BDNFP23560 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.68■□□□□ 0.74
BDNFP23560 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
BDNFP23560 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.68■□□□□ 0.74
BDNFP23560 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.68■□□□□ 0.74
BDNFP23560 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
BDNFP23560 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
BDNFP23560 KRT8P7-201ENST00000533003 1432 ntBASIC19.68■□□□□ 0.74
BDNFP23560 LINC01311-201ENST00000565162 1445 ntBASIC19.68■□□□□ 0.74
BDNFP23560 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.67■□□□□ 0.74
BDNFP23560 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BDNFP23560 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BDNFP23560 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.67■□□□□ 0.74
BDNFP23560 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BDNFP23560 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BDNFP23560 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.67■□□□□ 0.74
BDNFP23560 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.67■□□□□ 0.74
BDNFP23560 AC092597.1-201ENST00000487352 616 ntBASIC19.67■□□□□ 0.74
BDNFP23560 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.67■□□□□ 0.74
BDNFP23560 FAM86EP-206ENST00000510506 987 ntBASIC19.67■□□□□ 0.74
BDNFP23560 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
BDNFP23560 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.67■□□□□ 0.74
BDNFP23560 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.67■□□□□ 0.74
BDNFP23560 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.67■□□□□ 0.74
BDNFP23560 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
BDNFP23560 AL121956.5-201ENST00000625261 221 ntBASIC19.67■□□□□ 0.74
BDNFP23560 AL157888.1-201ENST00000631930 593 ntBASIC19.67■□□□□ 0.74
BDNFP23560 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BDNFP23560 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.67■□□□□ 0.74
BDNFP23560 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BDNFP23560 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.67■□□□□ 0.74
BDNFP23560 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
BDNFP23560 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
BDNFP23560 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.66■□□□□ 0.74
BDNFP23560 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.66■□□□□ 0.74
BDNFP23560 AC104390.1-201ENST00000555663 520 ntBASIC19.66■□□□□ 0.74
BDNFP23560 MIR3917-201ENST00000580971 93 ntBASIC19.66■□□□□ 0.74
BDNFP23560 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
BDNFP23560 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
BDNFP23560 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.66■□□□□ 0.74
BDNFP23560 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.65■□□□□ 0.74
BDNFP23560 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
BDNFP23560 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms