Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.22■□□□□ 0.51
HOXC4P09017 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 AC112777.1-201ENST00000540175 1423 ntBASIC18.22■□□□□ 0.51
HOXC4P09017 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.22■□□□□ 0.51
HOXC4P09017 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HOXC4P09017 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.21■□□□□ 0.51
HOXC4P09017 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
HOXC4P09017 KRT89P-201ENST00000620027 1478 ntBASIC18.21■□□□□ 0.51
HOXC4P09017 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.21■□□□□ 0.51
HOXC4P09017 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.21■□□□□ 0.51
HOXC4P09017 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HOXC4P09017 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.21■□□□□ 0.51
HOXC4P09017 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.21■□□□□ 0.51
HOXC4P09017 KRT8P26-201ENST00000534154 1276 ntBASIC18.21■□□□□ 0.51
HOXC4P09017 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.21■□□□□ 0.51
HOXC4P09017 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
HOXC4P09017 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HOXC4P09017 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HOXC4P09017 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.5
HOXC4P09017 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC4P09017 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.2■□□□□ 0.5
HOXC4P09017 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HOXC4P09017 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC4P09017 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HOXC4P09017 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC4P09017 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC4P09017 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC4P09017 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HOXC4P09017 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HOXC4P09017 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HOXC4P09017 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC4P09017 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC4P09017 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.2■□□□□ 0.5
HOXC4P09017 BX276092.5-203ENST00000456199 560 ntBASIC18.2■□□□□ 0.5
HOXC4P09017 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.2■□□□□ 0.5
HOXC4P09017 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.2■□□□□ 0.5
HOXC4P09017 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC4P09017 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC4P09017 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HOXC4P09017 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HOXC4P09017 AC016734.2-201ENST00000624325 1377 ntBASIC18.19■□□□□ 0.5
HOXC4P09017 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HOXC4P09017 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HOXC4P09017 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.19■□□□□ 0.5
HOXC4P09017 MIR149-201ENST00000384879 89 ntBASIC18.19■□□□□ 0.5
HOXC4P09017 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.19■□□□□ 0.5
HOXC4P09017 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.19■□□□□ 0.5
HOXC4P09017 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.19■□□□□ 0.5
HOXC4P09017 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.19■□□□□ 0.5
HOXC4P09017 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.19■□□□□ 0.5
HOXC4P09017 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.19■□□□□ 0.5
HOXC4P09017 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.19■□□□□ 0.5
HOXC4P09017 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.19■□□□□ 0.5
HOXC4P09017 AC024563.2-201ENST00000603282 481 ntBASIC18.19■□□□□ 0.5
HOXC4P09017 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 NPAP1P7-201ENST00000613027 823 ntBASIC18.19■□□□□ 0.5
HOXC4P09017 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.19■□□□□ 0.5
HOXC4P09017 AC093458.2-201ENST00000623150 629 ntBASIC18.19■□□□□ 0.5
HOXC4P09017 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HOXC4P09017 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.19■□□□□ 0.5
HOXC4P09017 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HOXC4P09017 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.18■□□□□ 0.5
HOXC4P09017 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.18■□□□□ 0.5
HOXC4P09017 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.18■□□□□ 0.5
HOXC4P09017 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 KRT18P48-201ENST00000434763 852 ntBASIC18.18■□□□□ 0.5
HOXC4P09017 TSSC2-201ENST00000450217 709 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms