Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
COL4A1P02462 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC22.86■■□□□ 1.25
COL4A1P02462 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 ABR-204ENST00000543210 1049 ntTSL 2 BASIC22.86■■□□□ 1.25
COL4A1P02462 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC22.86■■□□□ 1.25
COL4A1P02462 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.86■■□□□ 1.25
COL4A1P02462 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL4A1P02462 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL4A1P02462 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
COL4A1P02462 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL4A1P02462 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC22.85■■□□□ 1.25
COL4A1P02462 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC22.85■■□□□ 1.25
COL4A1P02462 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC22.85■■□□□ 1.25
COL4A1P02462 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL4A1P02462 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC22.85■■□□□ 1.25
COL4A1P02462 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
COL4A1P02462 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL4A1P02462 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL4A1P02462 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL4A1P02462 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
COL4A1P02462 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC22.84■■□□□ 1.25
COL4A1P02462 CDV3-207ENST00000508481 661 ntTSL 3 BASIC22.84■■□□□ 1.25
COL4A1P02462 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC22.84■■□□□ 1.25
COL4A1P02462 UROS-202ENST00000368778 1556 ntTSL 2 BASIC22.84■■□□□ 1.25
COL4A1P02462 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.84■■□□□ 1.25
COL4A1P02462 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.84■■□□□ 1.25
COL4A1P02462 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
COL4A1P02462 RN7SL606P-201ENST00000472779 293 ntBASIC22.84■■□□□ 1.25
COL4A1P02462 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC22.84■■□□□ 1.25
COL4A1P02462 AC099336.1-202ENST00000602961 463 ntBASIC22.84■■□□□ 1.25
COL4A1P02462 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL4A1P02462 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.84■■□□□ 1.25
COL4A1P02462 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.83■■□□□ 1.25
COL4A1P02462 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
COL4A1P02462 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.83■■□□□ 1.25
COL4A1P02462 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL4A1P02462 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL4A1P02462 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL4A1P02462 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC22.83■■□□□ 1.24
COL4A1P02462 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC22.83■■□□□ 1.24
COL4A1P02462 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC22.83■■□□□ 1.24
COL4A1P02462 AP002469.2-201ENST00000531724 424 ntBASIC22.83■■□□□ 1.24
COL4A1P02462 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC22.83■■□□□ 1.24
COL4A1P02462 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
COL4A1P02462 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.24
COL4A1P02462 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.24
COL4A1P02462 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.83■■□□□ 1.24
COL4A1P02462 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC22.83■■□□□ 1.24
COL4A1P02462 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL4A1P02462 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC22.83■■□□□ 1.24
COL4A1P02462 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL4A1P02462 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.82■■□□□ 1.24
COL4A1P02462 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
COL4A1P02462 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC22.82■■□□□ 1.24
COL4A1P02462 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC22.82■■□□□ 1.24
COL4A1P02462 AC104819.1-201ENST00000504587 486 ntBASIC22.82■■□□□ 1.24
COL4A1P02462 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC22.82■■□□□ 1.24
COL4A1P02462 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC22.82■■□□□ 1.24
COL4A1P02462 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC22.82■■□□□ 1.24
COL4A1P02462 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
COL4A1P02462 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.82■■□□□ 1.24
COL4A1P02462 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL4A1P02462 NSUN5P1-202ENST00000421140 1535 ntBASIC22.82■■□□□ 1.24
COL4A1P02462 NSUN5P2-203ENST00000457352 1529 ntBASIC22.82■■□□□ 1.24
COL4A1P02462 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC22.81■■□□□ 1.24
COL4A1P02462 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
COL4A1P02462 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
COL4A1P02462 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
COL4A1P02462 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC22.81■■□□□ 1.24
COL4A1P02462 FAAHP1-202ENST00000446499 1238 ntBASIC22.81■■□□□ 1.24
COL4A1P02462 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms