Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL1A1P02452 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL1A1P02452 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL1A1P02452 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL1A1P02452 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC22.48■■□□□ 1.19
COL1A1P02452 UBC-206ENST00000538617 1303 ntTSL 5 BASIC22.48■■□□□ 1.19
COL1A1P02452 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.48■■□□□ 1.19
COL1A1P02452 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.48■■□□□ 1.19
COL1A1P02452 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.48■■□□□ 1.19
COL1A1P02452 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.48■■□□□ 1.19
COL1A1P02452 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC22.48■■□□□ 1.19
COL1A1P02452 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC22.48■■□□□ 1.19
COL1A1P02452 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL1A1P02452 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
COL1A1P02452 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
COL1A1P02452 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL1A1P02452 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.48■■□□□ 1.19
COL1A1P02452 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC22.47■■□□□ 1.19
COL1A1P02452 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC22.47■■□□□ 1.19
COL1A1P02452 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC22.47■■□□□ 1.19
COL1A1P02452 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.47■■□□□ 1.19
COL1A1P02452 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
COL1A1P02452 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC22.47■■□□□ 1.19
COL1A1P02452 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL1A1P02452 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC22.47■■□□□ 1.19
COL1A1P02452 AL845331.1-201ENST00000424978 1190 ntBASIC22.47■■□□□ 1.19
COL1A1P02452 KRT18P41-201ENST00000518924 1277 ntBASIC22.47■■□□□ 1.19
COL1A1P02452 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC22.47■■□□□ 1.19
COL1A1P02452 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC22.47■■□□□ 1.19
COL1A1P02452 AL390719.2-201ENST00000606993 987 ntBASIC22.47■■□□□ 1.19
COL1A1P02452 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
COL1A1P02452 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL1A1P02452 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.46■■□□□ 1.19
COL1A1P02452 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL1A1P02452 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.46■■□□□ 1.19
COL1A1P02452 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL1A1P02452 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.46■■□□□ 1.19
COL1A1P02452 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL1A1P02452 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL1A1P02452 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
COL1A1P02452 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC22.46■■□□□ 1.19
COL1A1P02452 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL1A1P02452 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC22.46■■□□□ 1.19
COL1A1P02452 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC22.46■■□□□ 1.19
COL1A1P02452 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
COL1A1P02452 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
COL1A1P02452 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
COL1A1P02452 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
COL1A1P02452 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL1A1P02452 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL1A1P02452 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.19
COL1A1P02452 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC22.45■■□□□ 1.18
COL1A1P02452 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
COL1A1P02452 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
COL1A1P02452 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC22.45■■□□□ 1.18
COL1A1P02452 UNC93B7-201ENST00000509439 705 ntBASIC22.45■■□□□ 1.18
COL1A1P02452 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC22.45■■□□□ 1.18
COL1A1P02452 TPSP2-201ENST00000561760 610 ntBASIC22.45■■□□□ 1.18
COL1A1P02452 MIR3180-4-201ENST00000582223 153 ntBASIC22.45■■□□□ 1.18
COL1A1P02452 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL1A1P02452 SNAI3-AS1-205ENST00000568633 2096 ntBASIC22.45■■□□□ 1.18
COL1A1P02452 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL1A1P02452 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.44■■□□□ 1.18
COL1A1P02452 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
COL1A1P02452 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL1A1P02452 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL1A1P02452 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL1A1P02452 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC22.44■■□□□ 1.18
COL1A1P02452 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC22.44■■□□□ 1.18
COL1A1P02452 DRAXINP1-201ENST00000437611 948 ntBASIC22.44■■□□□ 1.18
COL1A1P02452 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC22.44■■□□□ 1.18
COL1A1P02452 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC22.44■■□□□ 1.18
COL1A1P02452 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC22.44■■□□□ 1.18
COL1A1P02452 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL1A1P02452 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC22.44■■□□□ 1.18
COL1A1P02452 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL1A1P02452 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms