Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.38■□□□□ 0.37
PRKNO60260 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PRKNO60260 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.37■□□□□ 0.37
PRKNO60260 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.37■□□□□ 0.37
PRKNO60260 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PRKNO60260 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
PRKNO60260 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.37■□□□□ 0.37
PRKNO60260 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 MIR3180-5-201ENST00000583743 153 ntBASIC17.37■□□□□ 0.37
PRKNO60260 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.37■□□□□ 0.37
PRKNO60260 AL499627.1-201ENST00000569373 2188 ntBASIC17.37■□□□□ 0.37
PRKNO60260 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.37■□□□□ 0.37
PRKNO60260 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PRKNO60260 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 AC093503.3-201ENST00000624917 2352 ntBASIC17.37■□□□□ 0.37
PRKNO60260 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PRKNO60260 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PRKNO60260 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.36■□□□□ 0.37
PRKNO60260 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.36■□□□□ 0.37
PRKNO60260 AL109659.2-201ENST00000606809 1674 ntBASIC17.36■□□□□ 0.37
PRKNO60260 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PRKNO60260 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PRKNO60260 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
PRKNO60260 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.36■□□□□ 0.37
PRKNO60260 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.36■□□□□ 0.37
PRKNO60260 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.36■□□□□ 0.37
PRKNO60260 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.36■□□□□ 0.37
PRKNO60260 KRT18P35-201ENST00000510488 1269 ntBASIC17.36■□□□□ 0.37
PRKNO60260 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.36■□□□□ 0.37
PRKNO60260 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
PRKNO60260 AL445228.2-201ENST00000605589 952 ntBASIC17.36■□□□□ 0.37
PRKNO60260 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.36■□□□□ 0.37
PRKNO60260 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.36■□□□□ 0.37
PRKNO60260 AC068587.9-201ENST00000641814 219 ntBASIC17.36■□□□□ 0.37
PRKNO60260 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.36■□□□□ 0.37
PRKNO60260 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PRKNO60260 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.36■□□□□ 0.37
PRKNO60260 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PRKNO60260 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.35■□□□□ 0.37
PRKNO60260 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.35■□□□□ 0.37
PRKNO60260 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PRKNO60260 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PRKNO60260 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 RNF152P1-201ENST00000397754 604 ntBASIC17.35■□□□□ 0.37
PRKNO60260 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.35■□□□□ 0.37
PRKNO60260 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.35■□□□□ 0.37
PRKNO60260 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.35■□□□□ 0.37
PRKNO60260 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.35■□□□□ 0.37
PRKNO60260 NTF6B-201ENST00000591913 560 ntBASIC17.35■□□□□ 0.37
PRKNO60260 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PRKNO60260 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.35■□□□□ 0.37
PRKNO60260 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
PRKNO60260 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms