Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.74■□□□□ 0.43
PROM1O43490 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PROM1O43490 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 KRT8P9-201ENST00000558927 1449 ntBASIC17.74■□□□□ 0.43
PROM1O43490 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PROM1O43490 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.74■□□□□ 0.43
PROM1O43490 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.74■□□□□ 0.43
PROM1O43490 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 C2orf69P3-201ENST00000565542 1120 ntBASIC17.74■□□□□ 0.43
PROM1O43490 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.74■□□□□ 0.43
PROM1O43490 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.74■□□□□ 0.43
PROM1O43490 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.74■□□□□ 0.43
PROM1O43490 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.74■□□□□ 0.43
PROM1O43490 CYP2D8P-201ENST00000433633 1490 ntBASIC17.74■□□□□ 0.43
PROM1O43490 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PROM1O43490 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.74■□□□□ 0.43
PROM1O43490 AL109659.2-201ENST00000606809 1674 ntBASIC17.74■□□□□ 0.43
PROM1O43490 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.73■□□□□ 0.43
PROM1O43490 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.73■□□□□ 0.43
PROM1O43490 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PROM1O43490 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PROM1O43490 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 TSPY14P-201ENST00000303979 915 ntBASIC17.73■□□□□ 0.43
PROM1O43490 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PROM1O43490 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.73■□□□□ 0.43
PROM1O43490 AL023284.2-201ENST00000405850 579 ntBASIC17.73■□□□□ 0.43
PROM1O43490 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 CCR12P-201ENST00000446203 998 ntBASIC17.73■□□□□ 0.43
PROM1O43490 KRT18P21-201ENST00000515767 1272 ntBASIC17.73■□□□□ 0.43
PROM1O43490 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.73■□□□□ 0.43
PROM1O43490 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.73■□□□□ 0.43
PROM1O43490 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.73■□□□□ 0.43
PROM1O43490 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.73■□□□□ 0.43
PROM1O43490 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PROM1O43490 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PROM1O43490 GPAT2P1-201ENST00000444924 1672 ntBASIC17.73■□□□□ 0.43
PROM1O43490 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.73■□□□□ 0.43
PROM1O43490 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.73■□□□□ 0.43
PROM1O43490 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PROM1O43490 AC092338.2-201ENST00000568827 1415 ntBASIC17.72■□□□□ 0.43
PROM1O43490 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.72■□□□□ 0.43
PROM1O43490 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
PROM1O43490 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
PROM1O43490 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.72■□□□□ 0.43
PROM1O43490 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
PROM1O43490 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.72■□□□□ 0.43
PROM1O43490 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
PROM1O43490 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.72■□□□□ 0.43
PROM1O43490 EGLN1P1-201ENST00000531623 762 ntBASIC17.72■□□□□ 0.43
PROM1O43490 BX088651.1-201ENST00000540551 451 ntBASIC17.72■□□□□ 0.43
PROM1O43490 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.72■□□□□ 0.43
PROM1O43490 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 AC010947.1-201ENST00000623454 693 ntBASIC17.72■□□□□ 0.43
PROM1O43490 AC116562.4-202ENST00000641738 218 ntBASIC17.72■□□□□ 0.43
PROM1O43490 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 ANO7L1-203ENST00000602586 1720 ntBASIC17.72■□□□□ 0.43
PROM1O43490 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PROM1O43490 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PROM1O43490 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PROM1O43490 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PROM1O43490 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PROM1O43490 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PROM1O43490 AC008556.1-201ENST00000610908 2040 ntBASIC17.71■□□□□ 0.43
PROM1O43490 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
PROM1O43490 AL357033.4-201ENST00000617703 1807 ntBASIC17.71■□□□□ 0.43
PROM1O43490 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PROM1O43490 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
PROM1O43490 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PROM1O43490 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms