Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
USH1CQ9Y6N9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 AC006015.1-201ENST00000429970 570 ntBASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 AC005829.2-201ENST00000571422 1056 ntBASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 AC124283.5-201ENST00000624661 1809 ntBASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USH1CQ9Y6N9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 AC005181.1-201ENST00000604782 1256 ntBASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.63■□□□□ 0.57
USH1CQ9Y6N9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 SLC25A6P5-201ENST00000435663 894 ntBASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 KRT18P5-201ENST00000436075 1291 ntBASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 YBX1P10-201ENST00000444752 975 ntBASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.62■□□□□ 0.57
USH1CQ9Y6N9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 AP006587.1-201ENST00000534129 1502 ntBASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms