Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 KRT18P58-201ENST00000527480 1120 ntBASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.57■■□□□ 1.36
RTCBQ9Y3I0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 AF186996.4-201ENST00000467186 377 ntBASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 AL591684.3-201ENST00000605187 298 ntBASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTCBQ9Y3I0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 AL137060.1-201ENST00000618151 2648 ntBASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 CLDN5-201ENST00000403084 2357 ntBASIC23.55■■□□□ 1.36
RTCBQ9Y3I0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 FEM1AP3-201ENST00000403722 1741 ntBASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 MIR5100-201ENST00000579544 119 ntBASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 BNIP3P18-201ENST00000593976 575 ntBASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 AC148477.8-201ENST00000624298 468 ntBASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.54■■□□□ 1.36
RTCBQ9Y3I0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 AC093909.1-201ENST00000504731 1122 ntBASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 RNPS1P1-201ENST00000507437 918 ntBASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 AC092865.5-201ENST00000545435 363 ntBASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 AC009065.1-201ENST00000564055 1225 ntBASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
RTCBQ9Y3I0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms