Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 AC079598.2-202ENST00000546624 1451 ntBASIC20.11■□□□□ 0.81
SIX2Q9NPC8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 MIR564-202ENST00000385049 94 ntBASIC20.1■□□□□ 0.81
SIX2Q9NPC8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX2Q9NPC8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX2Q9NPC8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 MCCD1P1-208ENST00000445732 328 ntBASIC20.08■□□□□ 0.81
SIX2Q9NPC8 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.08■□□□□ 0.81
SIX2Q9NPC8 AL023803.3-201ENST00000615559 522 ntBASIC20.08■□□□□ 0.81
SIX2Q9NPC8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 MYLKP1-201ENST00000509077 1580 ntBASIC20.08■□□□□ 0.8
SIX2Q9NPC8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
SIX2Q9NPC8 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 AP000525.1-201ENST00000608286 694 ntBASIC20.07■□□□□ 0.8
SIX2Q9NPC8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 MYC-208ENST00000641036 567 ntBASIC20.07■□□□□ 0.8
SIX2Q9NPC8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 NOC2LP1-202ENST00000452600 2235 ntBASIC20.07■□□□□ 0.8
SIX2Q9NPC8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms