Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.36■□□□□ 0.69
PCDH9Q9HC56 MTMR9LP-203ENST00000426597 1545 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 KRT8P11-201ENST00000409686 1436 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 NOC2LP1-202ENST00000452600 2235 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 B3GAT3P1-201ENST00000471720 806 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 AC011506.1-201ENST00000474329 610 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 AC011298.2-201ENST00000617989 482 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 AC068587.9-201ENST00000641814 219 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 FSCN1P1-201ENST00000568912 1481 ntBASIC19.35■□□□□ 0.69
PCDH9Q9HC56 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDH9Q9HC56 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 AC091390.4-202ENST00000476426 537 ntBASIC19.34■□□□□ 0.69
PCDH9Q9HC56 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 AC116562.2-201ENST00000507042 360 ntBASIC19.34■□□□□ 0.69
PCDH9Q9HC56 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDH9Q9HC56 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.33■□□□□ 0.69
PCDH9Q9HC56 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
PCDH9Q9HC56 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 MESTP1-201ENST00000404287 994 ntBASIC19.33■□□□□ 0.68
PCDH9Q9HC56 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 PRSS44-201ENST00000515154 1146 ntBASIC19.33■□□□□ 0.68
PCDH9Q9HC56 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms