Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.66■□□□□ 0.58
TRIM4Q9C037 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM4Q9C037 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM4Q9C037 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRIM4Q9C037 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM4Q9C037 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM4Q9C037 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TRIM4Q9C037 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM4Q9C037 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM4Q9C037 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM4Q9C037 KRT16P6-202ENST00000425692 1426 ntBASIC18.66■□□□□ 0.58
TRIM4Q9C037 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM4Q9C037 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 Z82202.1-201ENST00000623446 1880 ntBASIC18.65■□□□□ 0.58
TRIM4Q9C037 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 AL355355.2-201ENST00000442321 338 ntBASIC18.65■□□□□ 0.58
TRIM4Q9C037 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 AC145285.6-201ENST00000604632 637 ntBASIC18.65■□□□□ 0.58
TRIM4Q9C037 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM4Q9C037 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
TRIM4Q9C037 NOC2LP2-201ENST00000407594 1944 ntBASIC18.64■□□□□ 0.58
TRIM4Q9C037 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM4Q9C037 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM4Q9C037 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 AC104581.1-202ENST00000635932 2618 ntBASIC18.64■□□□□ 0.57
TRIM4Q9C037 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM4Q9C037 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM4Q9C037 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM4Q9C037 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM4Q9C037 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM4Q9C037 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM4Q9C037 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TRIM4Q9C037 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM4Q9C037 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.63■□□□□ 0.57
TRIM4Q9C037 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM4Q9C037 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms