Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL21A1Q96P44 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
COL21A1Q96P44 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.42
COL21A1Q96P44 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
COL21A1Q96P44 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL21A1Q96P44 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 WIZP1-201ENST00000531444 2299 ntBASIC17.7■□□□□ 0.42
COL21A1Q96P44 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 FSCN1P1-201ENST00000568912 1481 ntBASIC17.7■□□□□ 0.42
COL21A1Q96P44 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 AC004951.3-201ENST00000418645 1148 ntBASIC17.7■□□□□ 0.42
COL21A1Q96P44 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 MIR6786-201ENST00000616843 113 ntBASIC17.7■□□□□ 0.42
COL21A1Q96P44 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL21A1Q96P44 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.7■□□□□ 0.42
COL21A1Q96P44 RCC2P6-201ENST00000526625 1557 ntBASIC17.7■□□□□ 0.42
COL21A1Q96P44 KRT17P2-201ENST00000300992 1314 ntBASIC17.7■□□□□ 0.42
COL21A1Q96P44 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 TSPY21P-201ENST00000433481 731 ntBASIC17.69■□□□□ 0.42
COL21A1Q96P44 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 AP003071.4-201ENST00000562276 1284 ntBASIC17.69■□□□□ 0.42
COL21A1Q96P44 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL21A1Q96P44 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.69■□□□□ 0.42
COL21A1Q96P44 BCL2-203ENST00000589955 5011 ntBASIC17.69■□□□□ 0.42
COL21A1Q96P44 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 KRT8P41-201ENST00000533985 1514 ntBASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 B3GAT3P1-201ENST00000471720 806 ntBASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC116562.2-201ENST00000507042 360 ntBASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC011298.2-201ENST00000617989 482 ntBASIC17.68■□□□□ 0.42
COL21A1Q96P44 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.68■□□□□ 0.42
COL21A1Q96P44 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL21A1Q96P44 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms