Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SYNE1Q8NF91 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.48
SYNE1Q8NF91 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AC092647.4-201ENST00000457211 535 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AC092597.1-201ENST00000487352 616 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AC083849.1-201ENST00000615227 514 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CLN6-221ENST00000637494 765 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 KRT8P45-201ENST00000414328 1447 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 UNC93B7-201ENST00000509439 705 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GLRB-205ENST00000512619 728 ntTSL 3 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AL023973.1-201ENST00000624619 620 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 PHGDH-210ENST00000641115 1638 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 KRT8P10-201ENST00000450021 1447 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 AL450487.1-201ENST00000426799 995 ntBASIC5.77□□□□□ -1.49
SYNE1Q8NF91 CCR12P-201ENST00000446203 998 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms