Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 AC104417.2-201ENST00000562989 1793 ntBASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ZNF540Q8NDQ6 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 UNC93B5-201ENST00000530315 699 ntBASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 HLA-B-256ENST00000639848 1089 ntBASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ZNF540Q8NDQ6 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 PRORSD1P-201ENST00000295112 541 ntBASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 AC006058.3-201ENST00000606217 1069 ntBASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 AC073592.3-201ENST00000625118 1834 ntBASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF540Q8NDQ6 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 FEM1AP3-201ENST00000403722 1741 ntBASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms