Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.88■□□□□ 0.93
USP38Q8NB14 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP38Q8NB14 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.88■□□□□ 0.93
USP38Q8NB14 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP38Q8NB14 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP38Q8NB14 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.88■□□□□ 0.93
USP38Q8NB14 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.88■□□□□ 0.93
USP38Q8NB14 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.88■□□□□ 0.93
USP38Q8NB14 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.88■□□□□ 0.93
USP38Q8NB14 MIR3652-201ENST00000579335 131 ntBASIC20.88■□□□□ 0.93
USP38Q8NB14 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP38Q8NB14 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP38Q8NB14 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
USP38Q8NB14 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.88■□□□□ 0.93
USP38Q8NB14 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.88■□□□□ 0.93
USP38Q8NB14 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP38Q8NB14 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
USP38Q8NB14 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.87■□□□□ 0.93
USP38Q8NB14 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.87■□□□□ 0.93
USP38Q8NB14 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.87■□□□□ 0.93
USP38Q8NB14 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.87■□□□□ 0.93
USP38Q8NB14 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.87■□□□□ 0.93
USP38Q8NB14 STARP1-201ENST00000397973 869 ntBASIC20.87■□□□□ 0.93
USP38Q8NB14 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.87■□□□□ 0.93
USP38Q8NB14 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USP38Q8NB14 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.87■□□□□ 0.93
USP38Q8NB14 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
USP38Q8NB14 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.87■□□□□ 0.93
USP38Q8NB14 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP38Q8NB14 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.86■□□□□ 0.93
USP38Q8NB14 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.86■□□□□ 0.93
USP38Q8NB14 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.86■□□□□ 0.93
USP38Q8NB14 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 FAAHP1-202ENST00000446499 1238 ntBASIC20.86■□□□□ 0.93
USP38Q8NB14 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.86■□□□□ 0.93
USP38Q8NB14 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.86■□□□□ 0.93
USP38Q8NB14 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.86■□□□□ 0.93
USP38Q8NB14 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.86■□□□□ 0.93
USP38Q8NB14 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
USP38Q8NB14 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP38Q8NB14 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP38Q8NB14 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 ZNF444P1-201ENST00000559497 298 ntBASIC20.85■□□□□ 0.93
USP38Q8NB14 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
USP38Q8NB14 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP38Q8NB14 AC093503.3-201ENST00000624917 2352 ntBASIC20.85■□□□□ 0.93
USP38Q8NB14 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.85■□□□□ 0.93
USP38Q8NB14 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.85■□□□□ 0.93
USP38Q8NB14 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.85■□□□□ 0.93
USP38Q8NB14 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.84■□□□□ 0.93
USP38Q8NB14 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.84■□□□□ 0.93
USP38Q8NB14 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP38Q8NB14 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.84■□□□□ 0.93
USP38Q8NB14 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP38Q8NB14 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.84■□□□□ 0.93
USP38Q8NB14 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP38Q8NB14 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP38Q8NB14 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms