Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SLC44A3Q8N4M1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SLC44A3Q8N4M1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
SLC44A3Q8N4M1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.14■□□□□ 0.66
SLC44A3Q8N4M1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.14■□□□□ 0.65
SLC44A3Q8N4M1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 KRT18P13-201ENST00000400056 1290 ntBASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 MIR3180-4-201ENST00000582223 153 ntBASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 TP73-AS1-207ENST00000624167 988 ntBASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SLC44A3Q8N4M1 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 NUS1P2-201ENST00000417358 873 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 VENTXP7-201ENST00000475503 772 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 AP005901.3-202ENST00000581653 237 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 AC024563.2-201ENST00000603282 481 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 TCF3P1-201ENST00000423021 1937 ntBASIC19.12■□□□□ 0.65
SLC44A3Q8N4M1 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SLC44A3Q8N4M1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms