Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 IRX1P1-201ENST00000438849 1838 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 AC138028.4-201ENST00000564984 1845 ntBASIC11.72□□□□□ -0.53
LINC00643Q86TS7 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC11.72□□□□□ -0.53
LINC00643Q86TS7 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 LINC00602-201ENST00000629776 2065 ntBASIC11.71□□□□□ -0.53
LINC00643Q86TS7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LINC00643Q86TS7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC11.71□□□□□ -0.54
LINC00643Q86TS7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
LINC00643Q86TS7 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 HARS-201ENST00000307633 1780 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 PP12613-201ENST00000424958 2230 ntBASIC11.7□□□□□ -0.54
LINC00643Q86TS7 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC11.7□□□□□ -0.54
LINC00643Q86TS7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00643Q86TS7 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms