Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.27■■□□□ 1
CCNA1P78396 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CCNA1P78396 AL121912.1-201ENST00000603683 238 ntBASIC21.27■■□□□ 1
CCNA1P78396 AL353801.3-201ENST00000609898 542 ntBASIC21.27■■□□□ 1
CCNA1P78396 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCNA1P78396 AL592071.1-201ENST00000611956 408 ntBASIC21.27■■□□□ 1
CCNA1P78396 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCNA1P78396 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.27■■□□□ 1
CCNA1P78396 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCNA1P78396 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CCNA1P78396 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCNA1P78396 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.27■□□□□ 0.99
CCNA1P78396 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.26■□□□□ 0.99
CCNA1P78396 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNA1P78396 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.26■□□□□ 0.99
CCNA1P78396 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.26■□□□□ 0.99
CCNA1P78396 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNA1P78396 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.26■□□□□ 0.99
CCNA1P78396 AL022342.1-201ENST00000400363 863 ntBASIC21.26■□□□□ 0.99
CCNA1P78396 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.26■□□□□ 0.99
CCNA1P78396 AC124864.1-201ENST00000623408 392 ntBASIC21.26■□□□□ 0.99
CCNA1P78396 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.26■□□□□ 0.99
CCNA1P78396 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNA1P78396 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNA1P78396 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNA1P78396 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNA1P78396 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
CCNA1P78396 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.25■□□□□ 0.99
CCNA1P78396 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CCNA1P78396 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.25■□□□□ 0.99
CCNA1P78396 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CCNA1P78396 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.25■□□□□ 0.99
CCNA1P78396 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.25■□□□□ 0.99
CCNA1P78396 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.25■□□□□ 0.99
CCNA1P78396 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.25■□□□□ 0.99
CCNA1P78396 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.25■□□□□ 0.99
CCNA1P78396 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CCNA1P78396 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNA1P78396 IRX1P1-201ENST00000438849 1838 ntBASIC21.25■□□□□ 0.99
CCNA1P78396 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNA1P78396 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CCNA1P78396 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CCNA1P78396 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNA1P78396 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNA1P78396 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNA1P78396 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.24■□□□□ 0.99
CCNA1P78396 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCNA1P78396 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CCNA1P78396 IGHV3-47-201ENST00000425060 335 ntBASIC21.24■□□□□ 0.99
CCNA1P78396 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNA1P78396 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.24■□□□□ 0.99
CCNA1P78396 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.24■□□□□ 0.99
CCNA1P78396 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNA1P78396 KRT89P-201ENST00000620027 1478 ntBASIC21.24■□□□□ 0.99
CCNA1P78396 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
CCNA1P78396 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNA1P78396 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CCNA1P78396 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.23■□□□□ 0.99
CCNA1P78396 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.23■□□□□ 0.99
CCNA1P78396 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCNA1P78396 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.23■□□□□ 0.99
CCNA1P78396 RN7SL606P-201ENST00000472779 293 ntBASIC21.23■□□□□ 0.99
CCNA1P78396 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.23■□□□□ 0.99
CCNA1P78396 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.23■□□□□ 0.99
CCNA1P78396 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.23■□□□□ 0.99
CCNA1P78396 SLC25A6P4-201ENST00000586535 553 ntBASIC21.23■□□□□ 0.99
CCNA1P78396 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.23■□□□□ 0.99
CCNA1P78396 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNA1P78396 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.23■□□□□ 0.99
CCNA1P78396 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCNA1P78396 FP475955.4-201ENST00000623131 1990 ntBASIC21.23■□□□□ 0.99
CCNA1P78396 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CCNA1P78396 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.22■□□□□ 0.99
CCNA1P78396 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNA1P78396 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.22■□□□□ 0.99
CCNA1P78396 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms