Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HDAC4P56524 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HDAC4P56524 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.54■□□□□ 0.72
HDAC4P56524 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDAC4P56524 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
HDAC4P56524 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.53■□□□□ 0.72
HDAC4P56524 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HDAC4P56524 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.53■□□□□ 0.72
HDAC4P56524 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
HDAC4P56524 TSPY17P-201ENST00000450329 467 ntBASIC19.53■□□□□ 0.72
HDAC4P56524 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
HDAC4P56524 AP003041.3-201ENST00000527151 707 ntBASIC19.53■□□□□ 0.72
HDAC4P56524 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.53■□□□□ 0.72
HDAC4P56524 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDAC4P56524 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC4P56524 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 AC007663.1-201ENST00000438948 1240 ntBASIC19.52■□□□□ 0.72
HDAC4P56524 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.52■□□□□ 0.72
HDAC4P56524 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.52■□□□□ 0.72
HDAC4P56524 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDAC4P56524 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC4P56524 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.52■□□□□ 0.71
HDAC4P56524 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC4P56524 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.52■□□□□ 0.71
HDAC4P56524 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC4P56524 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.52■□□□□ 0.71
HDAC4P56524 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDAC4P56524 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.51■□□□□ 0.71
HDAC4P56524 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HDAC4P56524 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.51■□□□□ 0.71
HDAC4P56524 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 MCCD1P1-208ENST00000445732 328 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 CCR12P-201ENST00000446203 998 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 EGLN1P1-201ENST00000531623 762 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.51■□□□□ 0.71
HDAC4P56524 NAPSB-206ENST00000562112 1266 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 AC116562.4-202ENST00000641738 218 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 AL499627.1-201ENST00000569373 2188 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HDAC4P56524 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 WIZP1-201ENST00000531444 2299 ntBASIC19.51■□□□□ 0.71
HDAC4P56524 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HDAC4P56524 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.51■□□□□ 0.71
HDAC4P56524 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HDAC4P56524 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HDAC4P56524 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDAC4P56524 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.5■□□□□ 0.71
HDAC4P56524 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC4P56524 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC4P56524 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
HDAC4P56524 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HDAC4P56524 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.5■□□□□ 0.71
HDAC4P56524 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HDAC4P56524 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDAC4P56524 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms