Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
HMGCS2P54868 GPR32P1-201ENST00000601788 811 ntBASIC21.61■■□□□ 1.05
HMGCS2P54868 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGCS2P54868 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
HMGCS2P54868 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGCS2P54868 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.61■■□□□ 1.05
HMGCS2P54868 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.61■■□□□ 1.05
HMGCS2P54868 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGCS2P54868 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS2P54868 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
HMGCS2P54868 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGCS2P54868 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.6■■□□□ 1.05
HMGCS2P54868 LINC01711-201ENST00000598340 967 ntBASIC21.6■■□□□ 1.05
HMGCS2P54868 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGCS2P54868 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGCS2P54868 AC233702.3-201ENST00000578656 1387 ntBASIC21.6■■□□□ 1.05
HMGCS2P54868 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGCS2P54868 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.59■■□□□ 1.05
HMGCS2P54868 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.59■■□□□ 1.05
HMGCS2P54868 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGCS2P54868 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGCS2P54868 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGCS2P54868 CLDN5-201ENST00000403084 2357 ntBASIC21.59■■□□□ 1.05
HMGCS2P54868 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
HMGCS2P54868 AL160237.2-201ENST00000556165 472 ntBASIC21.59■■□□□ 1.05
HMGCS2P54868 MIR3180-4-201ENST00000582223 153 ntBASIC21.59■■□□□ 1.05
HMGCS2P54868 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGCS2P54868 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGCS2P54868 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.59■■□□□ 1.05
HMGCS2P54868 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.59■■□□□ 1.05
HMGCS2P54868 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGCS2P54868 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGCS2P54868 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGCS2P54868 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS2P54868 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGCS2P54868 FP475955.4-201ENST00000623131 1990 ntBASIC21.58■■□□□ 1.05
HMGCS2P54868 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGCS2P54868 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGCS2P54868 IGHGP-201ENST00000390555 1178 ntBASIC21.58■■□□□ 1.05
HMGCS2P54868 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.58■■□□□ 1.05
HMGCS2P54868 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS2P54868 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.58■■□□□ 1.05
HMGCS2P54868 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.58■■□□□ 1.05
HMGCS2P54868 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGCS2P54868 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGCS2P54868 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.58■■□□□ 1.04
HMGCS2P54868 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGCS2P54868 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
HMGCS2P54868 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.58■■□□□ 1.04
HMGCS2P54868 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGCS2P54868 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.57■■□□□ 1.04
HMGCS2P54868 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGCS2P54868 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGCS2P54868 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.57■■□□□ 1.04
HMGCS2P54868 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.57■■□□□ 1.04
HMGCS2P54868 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
HMGCS2P54868 AC099336.1-202ENST00000602961 463 ntBASIC21.57■■□□□ 1.04
HMGCS2P54868 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
HMGCS2P54868 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGCS2P54868 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGCS2P54868 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
HMGCS2P54868 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGCS2P54868 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HMGCS2P54868 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.56■■□□□ 1.04
HMGCS2P54868 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.56■■□□□ 1.04
HMGCS2P54868 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.56■■□□□ 1.04
HMGCS2P54868 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms