Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.14■□□□□ 0.33
MSX1P28360 AC091076.1-201ENST00000610741 619 ntBASIC17.14■□□□□ 0.33
MSX1P28360 AC008622.2-201ENST00000617006 1229 ntBASIC17.14■□□□□ 0.33
MSX1P28360 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MSX1P28360 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
MSX1P28360 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
MSX1P28360 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.14■□□□□ 0.33
MSX1P28360 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX1P28360 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX1P28360 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 AL109659.2-201ENST00000606809 1674 ntBASIC17.13■□□□□ 0.33
MSX1P28360 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 AC120498.9-201ENST00000339021 3867 ntBASIC17.13■□□□□ 0.33
MSX1P28360 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
MSX1P28360 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.13■□□□□ 0.33
MSX1P28360 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 AP003041.3-201ENST00000527151 707 ntBASIC17.13■□□□□ 0.33
MSX1P28360 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.13■□□□□ 0.33
MSX1P28360 AC068587.9-201ENST00000641814 219 ntBASIC17.13■□□□□ 0.33
MSX1P28360 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.13■□□□□ 0.33
MSX1P28360 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX1P28360 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 HEIH-201ENST00000623091 1652 ntBASIC17.13■□□□□ 0.33
MSX1P28360 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX1P28360 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
MSX1P28360 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX1P28360 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.12■□□□□ 0.33
MSX1P28360 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
MSX1P28360 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
MSX1P28360 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
MSX1P28360 AL023284.2-201ENST00000405850 579 ntBASIC17.12■□□□□ 0.33
MSX1P28360 AC117947.1-201ENST00000427448 529 ntBASIC17.12■□□□□ 0.33
MSX1P28360 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSX1P28360 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.12■□□□□ 0.33
MSX1P28360 MCCD1P1-208ENST00000445732 328 ntBASIC17.12■□□□□ 0.33
MSX1P28360 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.12■□□□□ 0.33
MSX1P28360 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.12■□□□□ 0.33
MSX1P28360 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX1P28360 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSX1P28360 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
MSX1P28360 AC006333.2-201ENST00000607957 2099 ntBASIC17.12■□□□□ 0.33
MSX1P28360 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX1P28360 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.12■□□□□ 0.33
MSX1P28360 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.12■□□□□ 0.33
MSX1P28360 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.12■□□□□ 0.33
MSX1P28360 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSX1P28360 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSX1P28360 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 RCC2P3-201ENST00000418112 1537 ntBASIC17.11■□□□□ 0.33
MSX1P28360 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.11■□□□□ 0.33
MSX1P28360 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.11■□□□□ 0.33
MSX1P28360 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.11■□□□□ 0.33
MSX1P28360 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.11■□□□□ 0.33
MSX1P28360 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 FAM8A6P-201ENST00000407496 1135 ntBASIC17.11■□□□□ 0.33
MSX1P28360 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.11■□□□□ 0.33
MSX1P28360 UPK3BP1-201ENST00000428678 509 ntBASIC17.11■□□□□ 0.33
MSX1P28360 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.11■□□□□ 0.33
MSX1P28360 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSX1P28360 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
MSX1P28360 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms