Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
HOXC4P09017 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.25■□□□□ 0.51
HOXC4P09017 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC4P09017 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.25■□□□□ 0.51
HOXC4P09017 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.25■□□□□ 0.51
HOXC4P09017 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.25■□□□□ 0.51
HOXC4P09017 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC4P09017 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC4P09017 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.25■□□□□ 0.51
HOXC4P09017 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC4P09017 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
HOXC4P09017 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.24■□□□□ 0.51
HOXC4P09017 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HOXC4P09017 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.24■□□□□ 0.51
HOXC4P09017 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.24■□□□□ 0.51
HOXC4P09017 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
HOXC4P09017 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.24■□□□□ 0.51
HOXC4P09017 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.24■□□□□ 0.51
HOXC4P09017 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.24■□□□□ 0.51
HOXC4P09017 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HOXC4P09017 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.24■□□□□ 0.51
HOXC4P09017 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.24■□□□□ 0.51
HOXC4P09017 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HOXC4P09017 AL049812.1-201ENST00000432563 2267 ntBASIC18.24■□□□□ 0.51
HOXC4P09017 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC4P09017 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 AL163051.1-201ENST00000569214 1512 ntBASIC18.23■□□□□ 0.51
HOXC4P09017 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.23■□□□□ 0.51
HOXC4P09017 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HOXC4P09017 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 ATP5G2P1-201ENST00000433580 426 ntBASIC18.23■□□□□ 0.51
HOXC4P09017 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.23■□□□□ 0.51
HOXC4P09017 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.23■□□□□ 0.51
HOXC4P09017 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HOXC4P09017 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HOXC4P09017 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.23■□□□□ 0.51
HOXC4P09017 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HOXC4P09017 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
HOXC4P09017 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
HOXC4P09017 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.22■□□□□ 0.51
HOXC4P09017 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.22■□□□□ 0.51
HOXC4P09017 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.22■□□□□ 0.51
HOXC4P09017 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.22■□□□□ 0.51
HOXC4P09017 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.22■□□□□ 0.51
HOXC4P09017 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
HOXC4P09017 AL121672.3-201ENST00000608644 468 ntBASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms