Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
VPS4BO75351 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4BO75351 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4BO75351 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.36■□□□□ 0.53
VPS4BO75351 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
VPS4BO75351 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
VPS4BO75351 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4BO75351 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS4BO75351 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS4BO75351 AC145285.6-201ENST00000604632 637 ntBASIC18.36■□□□□ 0.53
VPS4BO75351 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 MIR6786-201ENST00000616843 113 ntBASIC18.36■□□□□ 0.53
VPS4BO75351 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4BO75351 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS4BO75351 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS4BO75351 AC007613.1-201ENST00000572811 2597 ntBASIC18.36■□□□□ 0.53
VPS4BO75351 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS4BO75351 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 AL353807.1-201ENST00000427475 662 ntBASIC18.35■□□□□ 0.53
VPS4BO75351 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS4BO75351 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS4BO75351 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS4BO75351 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS4BO75351 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.34■□□□□ 0.53
VPS4BO75351 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
VPS4BO75351 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS4BO75351 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS4BO75351 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS4BO75351 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS4BO75351 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS4BO75351 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS4BO75351 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4BO75351 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms