Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.6■□□□□ 0.41
LDB3O75112 AL357033.4-201ENST00000617703 1807 ntBASIC17.6■□□□□ 0.41
LDB3O75112 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.6■□□□□ 0.41
LDB3O75112 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LDB3O75112 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.59■□□□□ 0.41
LDB3O75112 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
LDB3O75112 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LDB3O75112 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.59■□□□□ 0.41
LDB3O75112 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.59■□□□□ 0.41
LDB3O75112 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.59■□□□□ 0.41
LDB3O75112 MIR3180-5-201ENST00000583743 153 ntBASIC17.59■□□□□ 0.41
LDB3O75112 AC005363.2-201ENST00000618631 242 ntBASIC17.59■□□□□ 0.41
LDB3O75112 CR769767.2-201ENST00000622735 460 ntBASIC17.59■□□□□ 0.41
LDB3O75112 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 AL020996.1-203ENST00000536896 2307 ntBASIC17.59■□□□□ 0.41
LDB3O75112 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
LDB3O75112 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDB3O75112 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.58■□□□□ 0.41
LDB3O75112 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LDB3O75112 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
LDB3O75112 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LDB3O75112 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
LDB3O75112 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.58■□□□□ 0.41
LDB3O75112 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.58■□□□□ 0.4
LDB3O75112 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
LDB3O75112 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.58■□□□□ 0.4
LDB3O75112 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 AC010203.1-204ENST00000548782 407 ntBASIC17.58■□□□□ 0.4
LDB3O75112 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.58■□□□□ 0.4
LDB3O75112 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.58■□□□□ 0.4
LDB3O75112 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.58■□□□□ 0.4
LDB3O75112 AL031598.1-201ENST00000561511 1773 ntBASIC17.58■□□□□ 0.4
LDB3O75112 ANO7L1-203ENST00000602586 1720 ntBASIC17.58■□□□□ 0.4
LDB3O75112 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
LDB3O75112 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LDB3O75112 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.58■□□□□ 0.4
LDB3O75112 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.58■□□□□ 0.4
LDB3O75112 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDB3O75112 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.57■□□□□ 0.4
LDB3O75112 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.57■□□□□ 0.4
LDB3O75112 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LDB3O75112 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.57■□□□□ 0.4
LDB3O75112 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.57■□□□□ 0.4
LDB3O75112 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 AC093525.10-201ENST00000625130 1569 ntBASIC17.57■□□□□ 0.4
LDB3O75112 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDB3O75112 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
LDB3O75112 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 AL499627.1-201ENST00000569373 2188 ntBASIC17.56■□□□□ 0.4
LDB3O75112 Z98044.1-201ENST00000632503 1764 ntBASIC17.56■□□□□ 0.4
LDB3O75112 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms