Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 AC011676.5-201ENST00000624864 2660 ntBASIC18.44■□□□□ 0.54
SNX3O60493 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.44■□□□□ 0.54
SNX3O60493 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
SNX3O60493 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNX3O60493 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.44■□□□□ 0.54
SNX3O60493 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.44■□□□□ 0.54
SNX3O60493 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.43■□□□□ 0.54
SNX3O60493 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
SNX3O60493 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.43■□□□□ 0.54
SNX3O60493 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.43■□□□□ 0.54
SNX3O60493 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.43■□□□□ 0.54
SNX3O60493 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SNX3O60493 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.43■□□□□ 0.54
SNX3O60493 GPX1P1-201ENST00000388829 606 ntBASIC18.43■□□□□ 0.54
SNX3O60493 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.43■□□□□ 0.54
SNX3O60493 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.43■□□□□ 0.54
SNX3O60493 MYC-208ENST00000641036 567 ntBASIC18.43■□□□□ 0.54
SNX3O60493 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SNX3O60493 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
SNX3O60493 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SNX3O60493 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNX3O60493 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
SNX3O60493 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SNX3O60493 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SNX3O60493 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 AC124283.5-201ENST00000624661 1809 ntBASIC18.42■□□□□ 0.54
SNX3O60493 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SNX3O60493 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.42■□□□□ 0.54
SNX3O60493 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.42■□□□□ 0.54
SNX3O60493 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.42■□□□□ 0.54
SNX3O60493 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.42■□□□□ 0.54
SNX3O60493 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 KRT17P1-201ENST00000399211 1546 ntBASIC18.42■□□□□ 0.54
SNX3O60493 AP006587.1-201ENST00000534129 1502 ntBASIC18.42■□□□□ 0.54
SNX3O60493 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 RCC2P6-201ENST00000526625 1557 ntBASIC18.42■□□□□ 0.54
SNX3O60493 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.42■□□□□ 0.54
SNX3O60493 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms