Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.95■□□□□ 0.14
SDCBPO00560 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 OR6D1P-202ENST00000641007 5290 ntBASIC15.95■□□□□ 0.14
SDCBPO00560 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.94■□□□□ 0.14
SDCBPO00560 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 ABALON-201ENST00000629058 1903 ntBASIC15.94■□□□□ 0.14
SDCBPO00560 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.94■□□□□ 0.14
SDCBPO00560 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.94■□□□□ 0.14
SDCBPO00560 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.94■□□□□ 0.14
SDCBPO00560 AC004264.1-201ENST00000608354 794 ntBASIC15.94■□□□□ 0.14
SDCBPO00560 TBCB-214ENST00000629269 413 ntTSL 5 BASIC15.94■□□□□ 0.14
SDCBPO00560 AC083906.6-201ENST00000641366 219 ntBASIC15.94■□□□□ 0.14
SDCBPO00560 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.94■□□□□ 0.14
SDCBPO00560 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.94■□□□□ 0.14
SDCBPO00560 AP000997.3-201ENST00000623333 2250 ntBASIC15.94■□□□□ 0.14
SDCBPO00560 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
SDCBPO00560 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SDCBPO00560 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.94■□□□□ 0.14
SDCBPO00560 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.93■□□□□ 0.14
SDCBPO00560 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.93■□□□□ 0.14
SDCBPO00560 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
SDCBPO00560 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
SDCBPO00560 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
SDCBPO00560 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.93■□□□□ 0.14
SDCBPO00560 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.93■□□□□ 0.14
SDCBPO00560 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 AC126763.1-201ENST00000552015 2118 ntBASIC15.93■□□□□ 0.14
SDCBPO00560 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC15.93■□□□□ 0.14
SDCBPO00560 Six3os1_6.1-201ENST00000620790 196 ntBASIC15.93■□□□□ 0.14
SDCBPO00560 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.93■□□□□ 0.14
SDCBPO00560 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
SDCBPO00560 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
SDCBPO00560 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SDCBPO00560 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
SDCBPO00560 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SDCBPO00560 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
SDCBPO00560 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
SDCBPO00560 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.92■□□□□ 0.14
SDCBPO00560 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.92■□□□□ 0.14
SDCBPO00560 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.92■□□□□ 0.14
SDCBPO00560 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms