Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CACNA1AO00555 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.58■□□□□ 0.4
CACNA1AO00555 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CACNA1AO00555 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CACNA1AO00555 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CACNA1AO00555 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.58■□□□□ 0.4
CACNA1AO00555 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.58■□□□□ 0.4
CACNA1AO00555 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.58■□□□□ 0.4
CACNA1AO00555 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.58■□□□□ 0.4
CACNA1AO00555 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CACNA1AO00555 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.58■□□□□ 0.4
CACNA1AO00555 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CACNA1AO00555 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.57■□□□□ 0.4
CACNA1AO00555 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.57■□□□□ 0.4
CACNA1AO00555 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.57■□□□□ 0.4
CACNA1AO00555 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.57■□□□□ 0.4
CACNA1AO00555 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.57■□□□□ 0.4
CACNA1AO00555 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.57■□□□□ 0.4
CACNA1AO00555 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 CEND1P1-201ENST00000451006 455 ntBASIC17.57■□□□□ 0.4
CACNA1AO00555 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 AP005018.1-201ENST00000525475 301 ntBASIC17.57■□□□□ 0.4
CACNA1AO00555 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.57■□□□□ 0.4
CACNA1AO00555 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.57■□□□□ 0.4
CACNA1AO00555 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.57■□□□□ 0.4
CACNA1AO00555 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.57■□□□□ 0.4
CACNA1AO00555 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.57■□□□□ 0.4
CACNA1AO00555 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CACNA1AO00555 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.57■□□□□ 0.4
CACNA1AO00555 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.56■□□□□ 0.4
CACNA1AO00555 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.56■□□□□ 0.4
CACNA1AO00555 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.56■□□□□ 0.4
CACNA1AO00555 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.56■□□□□ 0.4
CACNA1AO00555 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CACNA1AO00555 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.56■□□□□ 0.4
CACNA1AO00555 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CACNA1AO00555 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.56■□□□□ 0.4
CACNA1AO00555 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.56■□□□□ 0.4
CACNA1AO00555 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.56■□□□□ 0.4
CACNA1AO00555 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CACNA1AO00555 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CACNA1AO00555 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.55■□□□□ 0.4
CACNA1AO00555 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.55■□□□□ 0.4
CACNA1AO00555 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.55■□□□□ 0.4
CACNA1AO00555 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.55■□□□□ 0.4
CACNA1AO00555 MIR3180-4-201ENST00000582223 153 ntBASIC17.55■□□□□ 0.4
CACNA1AO00555 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.55■□□□□ 0.4
CACNA1AO00555 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.55■□□□□ 0.4
CACNA1AO00555 INTS4P1-201ENST00000438455 1935 ntBASIC17.55■□□□□ 0.4
CACNA1AO00555 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.55■□□□□ 0.4
CACNA1AO00555 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CACNA1AO00555 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 TERF1P3-201ENST00000505638 1227 ntBASIC17.55■□□□□ 0.4
CACNA1AO00555 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
CACNA1AO00555 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms