Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 KRT18P56-201ENST00000507275 550 ntBASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 AL133373.2-201ENST00000623187 2828 ntBASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
TMX2-CTNND1H3BSU7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 AL441883.1-201ENST00000566170 1045 ntBASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 AL023973.1-201ENST00000624619 620 ntBASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMX2-CTNND1H3BSU7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 AL359075.1-203ENST00000462729 1002 ntBASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TMX2-CTNND1H3BSU7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.34■□□□□ 0.53
TMX2-CTNND1H3BSU7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms