Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHA3Q9Y5H8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHA3Q9Y5H8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHA3Q9Y5H8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 AC112777.1-201ENST00000540175 1423 ntBASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 MYC-208ENST00000641036 567 ntBASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDHA3Q9Y5H8 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 KRT8P45-201ENST00000414328 1447 ntBASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 AC008040.2-201ENST00000461049 708 ntBASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 KRT16P1-201ENST00000399124 1418 ntBASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHA3Q9Y5H8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHA3Q9Y5H8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AL353807.1-201ENST00000427475 662 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AC128676.1-201ENST00000454392 318 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 CKBP1-201ENST00000565489 1086 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AC026271.3-201ENST00000571884 352 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AC130371.2-201ENST00000619443 611 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AL031985.4-201ENST00000642138 673 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AC020763.4-201ENST00000623414 4170 ntBASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDHA3Q9Y5H8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHA3Q9Y5H8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms